PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma26g00560.1
Common NameZOSMA_26G00560
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 848aa    MW: 95445.6 Da    PI: 8.4015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma26g00560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-123985455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Zosma26g00560.1 39 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 85
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.133584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1938101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.17E-153889No hitNo description
Gene3DG3DSA:4.10.280.102.3E-183997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-103985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-174190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF130412.8E-9262309IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.117262296IPR002885Pentatricopeptide repeat
SuperFamilySSF484524.17E-5262449IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007566.1E-4264297IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.467297331IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.47332362IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.0E-5362455IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.216363393IPR002885Pentatricopeptide repeat
PfamPF015352.3E-7365394IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.4E-6365394IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.496394428IPR002885Pentatricopeptide repeat
PfamPF015352.1E-9396425IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-8396425IPR002885Pentatricopeptide repeat
PfamPF015353.1E-7427452IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.3E-7427457IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.059429460IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.0E-5489556IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.997492522IPR002885Pentatricopeptide repeat
PfamPF015351.8E-6494519IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-6494519IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.646525559IPR002885Pentatricopeptide repeat
PfamPF015355.9E-5528554IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.9E-6528561IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.678630660IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.325663693IPR002885Pentatricopeptide repeat
PfamPF015350.17666692IPR002885Pentatricopeptide repeat
PfamPF138120.0056694745IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.75697732IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.541733763IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.105.0E-5797817IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.717799833IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MDVELLNDDR PAVSTVVTDE RRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA  60
VVPNISKMDK ASLLGDAISY ITELQKKLKE MESEKDVQQN SPDVDVQMGN NEVIVHVSTP  120
LETHPVSTVI NVFKETQVDV VDSKFSASNN TVFHTFVVKT QSGSEQMTMA KIPCSLRRGN  180
LAFLSVVSAV TFLFRHIHRC TNKKLQCQFL DQLSVAGFLG EPLLLRHTLL FSSDGPGSSN  240
SPNLRFALAV LPHIYSFDSS FDVVVWNSAI RGYEQNGNPW GAFYLYCRMS HHNVVPDNYT  300
YPFVLKACAN SASLEQGAQV HCRIIKSPHT TDIYIECYLV DMYAKCHRIN SSRAVFDNIR  360
HKNVFCWNVI IAGYAKNGDM FGAAELFDEM PRRDLFSWNT MIDGYAKCGE VKSARKLFDE  420
METRDVITWN SMIDGYVRSG DMEAAKKLFV EISIKDGLTW GVILNGYVAT TGDEVTGVQM  480
MHGLFEKLPY KNTITWNSLI SAYVRANKVS DALTLFESMG IRVRNSSSWN TMLYGLVKSG  540
DIRVAEKLFK AMPVKDSISW NIMSVGYREK NEFKNIIELF HSMTTTVGAG KISADCATLV  600
IALSAVGVMT LYDDGRLIHE YLKKNRITTD GVVGVALLDM YFKCGYPDMA FETFHAISHE  660
SRTIDHWNGI ITGAANHGLG TLAMKLFTKM VGKVRPDEIT FIALLKACNH AGLIREGFVL  720
FDLMSTKYGI TPTVQHYGCL IDLLGRAGFL EEAEEIARKM PWKTNDVIWR SLLGSSRHHN  780
DVVIAEISAK RLVEMMPRDS SSYVLMSHIY WSTGQRENHR DVLKEMNKKG VVKKVPGFSS  840
VRVESNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-402627753332PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12028RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PGD50.0A0A0K9PGD5_ZOSMR; Pentatricopeptide repeat-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.19e-59ABA-inducible BHLH-type transcription factor