PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma267g00370.1
Common NameZOSMA_267G00370
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 226aa    MW: 25859.1 Da    PI: 7.9845
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma267g00370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.41.9e-25112171258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       +Dgy+WrKYGqK++ g+++p++Y+rCt++   +C ++k+v+ s+ d +v++itY geH +
  Zosma267g00370.1 112 EDGYHWRKYGQKDILGTKHPKGYFRCTYSqsrQCLATKHVQMSDGDRTVFDITYFGEHSC 171
                       8**************************998899*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.082106170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-24108171IPR003657WRKY domain
SuperFamilySSF1182906.67E-23110171IPR003657WRKY domain
SMARTSM007746.9E-34111173IPR003657WRKY domain
PfamPF031061.9E-23112171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MENNLIVEIN NSRAFVKKLQ LLLDQQDLHC LDISSIKSLV NSLTTSIENT MTRTQFAIFQ  60
GEQIKQEESP SSVNDTPRVQ RSKKRIRRSK EKFTRHVKVT VNLAKGLAGS LEDGYHWRKY  120
GQKDILGTKH PKGYFRCTYS QSRQCLATKH VQMSDGDRTV FDITYFGEHS CFPGESKNKE  180
TVPPDHDVIT ENASVLSLPD MSELFYQDYL ALENEFSFAT NYYLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-18107171468OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PET61e-169A0A0K9PET6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-26WRKY family protein