PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma267g00250.1
Common NameZOSMA_267G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 712aa    MW: 78632.4 Da    PI: 5.1375
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma267g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.77.6e-2982166187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+laL+++r++m+ ++r++ lk+plW++vs+ m+e+g++rs+k+Ckek+en++k+yk+++++  + +  + +++++f+qlea
  Zosma267g00250.1  82 RWPRQETLALLKIRSDMDAAFRDATLKGPLWDKVSSMMAEEGYTRSSKKCKEKFENVHKYYKRTRKNCAGTQ--DGKSYRFFSQLEA 166
                       8*******************************************************************9964..4556*******85 PP
2trihelix1093e-34438523187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k evlaLi++r+eme r++++  k+plWe++s++m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Zosma267g00250.1 438 RWPKTEVLALIKVRSEMEPRYQESGPKGPLWEDISSAMQKMGYNRSSKRCKEKWENINKYFKKVKESSKKR-PEDSKTCPYFHQLDA 523
                       8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.57475139IPR017877Myb-like domain
SMARTSM007170.001579141IPR001005SANT/Myb domain
CDDcd122032.51E-2581146No hitNo description
PfamPF138371.5E-1981167No hitNo description
PROSITE profilePS500907.631431495IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.0E-4433494IPR009057Homeodomain-like
SMARTSM007171.5E-4435497IPR001005SANT/Myb domain
CDDcd122037.31E-30437502No hitNo description
PfamPF138372.3E-23437524No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MEQYGAQPHL TTSATEMPHQ QMLEQLQQKG LPEIALPIST RPPTDLVDEI AATVGVGNYV  60
DDMEQPMAVG EETERGGVMG NRWPRQETLA LLKIRSDMDA AFRDATLKGP LWDKVSSMMA  120
EEGYTRSSKK CKEKFENVHK YYKRTRKNCA GTQDGKSYRF FSQLEALQNS TMSSSISVTP  180
TPLPPLQPNQ PAVMLGNLQN QQPLSEMQLP PQGGRGEGLG IGAGGASSLF SFSSNTSSST  240
SLSGSDGEDT AEEATDERGG SKKRKRCSEK SESAGKKMRS FFKGLMQQVL ERQENMQRTF  300
LETVEKREQE RMVREEAWRR QEMARLNRDH DLAAQERAIA ASRDTCIITF LQKITGESVQ  360
FPQVPPMNVN ITPPPPPYNA TVALPQSSFQ QIPQPPQYVQ RQRGETTPRR QPPPVTSSDV  420
NTPSRETTAT NDSASSSRWP KTEVLALIKV RSEMEPRYQE SGPKGPLWED ISSAMQKMGY  480
NRSSKRCKEK WENINKYFKK VKESSKKRPE DSKTCPYFHQ LDALYRKKII GGGGGTSTGG  540
NGQQTGQIET STEPINPDIL PITTLPPAAP TQQTILVHAR GASETCGVSE SMQVQQLNTS  600
NGDHPQPQCF SERGVSSAND DVMKKPEDTV NLEMIKNYEN PEENESEGMT IGDEDNDDDD  660
DEEEEDEEKQ KTAYKIELQN GGGNSSNNNG NNTTATGAAA TTAGSFLAMV K*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PGW10.0A0A0K9PGW1_ZOSMR; Trihelix transcription factor
STRINGGorai.003G072300.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.16e-40GT-2-like 1