PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma261g00260.1 | ||||||||
Common Name | ZOSMA_261G00260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 205aa MW: 23573.9 Da PI: 8.5811 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.9 | 1.4e-07 | 2 | 62 | 31 | 90 |
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++ Csk+g+++ t+ +rr++ ++r gC ++k k+ + +++w+ +++ HnH+++ Zosma261g00260.1 2 KRLLCSKQGSPSLILPPTNGNRRKNGVSRYGCLESIKFKRINrSDNWVTDTVIFYHNHPFT 62 6899********9999999*********************999***************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKRLLCSKQG SPSLILPPTN GNRRKNGVSR YGCLESIKFK RINRSDNWVT DTVIFYHNHP 60 FTTPSKIRYL PINRSISQTS KLLFSSLAEV NVPVSQQAAY FSNQPGGVQN MGCMKMVINN 120 MVRDDRIDLK NYDVDLIVEE FEMNKSENEE FFYDLVKDDE GRLKHLFWAD PTMIENYKLF 180 GNSVTFDTTY KTNVYSMVFG IFCG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PFA9 | 1e-151 | A0A0K9PFA9_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1424 | 4 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-21 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma261g00260.1 |