PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma25g01400.1
Common NameZOSMA_25G01400
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 301aa    MW: 33514.2 Da    PI: 6.8193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma25g01400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.7e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE++ l+ +++++G g W+tI +          R+  ++k++w++
  Zosma25g01400.1  5 KQKWTAEEELALKAGIEKHGAGKWRTILKDPEfsrilYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.445161IPR017930Myb domain
SuperFamilySSF466892.03E-15262IPR009057Homeodomain-like
SMARTSM007175.6E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13456IPR009057Homeodomain-like
PfamPF002491.7E-8555IPR001005SANT/Myb domain
CDDcd116602.33E-18656No hitNo description
Gene3DG3DSA:1.10.10.104.3E-17117188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.5E-15118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.71E-18118193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150426.186120188IPR005818Linker histone H1/H5, domain H15
CDDcd000737.45E-12122181No hitNo description
PfamPF005381.0E-12122181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGAPKQKWTA EEELALKAGI EKHGAGKWRT ILKDPEFSRI LYLRSNVDLK DKWRNMSVTS  60
HDWGSRARPR ISWKKTQQVH KHDNSLAMTT VDEDIDNEIV DANPLAISDE ILQIPNADRS  120
IPRLDDIVLE AITNLKDPTG SSMTAIAIYI EEEYWSPPNL ESMLSAKLKA LTANGKLVKV  180
KRKYRIAPVL GFSSRRSSRK LPIEGKQKEL IRSEIRDFKA PKYQIDAEIA RMKSMSSHEA  240
VAAAAQAMIE AEAAIAEAEE AAREAEIAEA DAEAAHAFAE AAKLTLTNRA ITDRLSMQEN  300
*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784788.11e-101single myb histone 6-like
RefseqXP_008784789.11e-101single myb histone 6-like
RefseqXP_008784790.11e-101single myb histone 6-like
SwissprotC0HIA38e-72SMH6_MAIZE; Single myb histone 6
TrEMBLA0A0K9PFL10.0A0A0K9PFL1_ZOSMR; Putative Histone H1.1
STRINGXP_008784788.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-72telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]