PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma257g00080.1
Common NameZOSMA_257G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 389aa    MW: 42573.6 Da    PI: 4.989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma257g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12224269555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR++i +++ +L++l+P++      K +Ka++L + +eY+k Lq
  Zosma257g00080.1 224 HSIAERLRREKISERMKNLQQLVPNS-----NKTDKASMLDEIIEYVKFLQ 269
                       99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.26E-13217273No hitNo description
SuperFamilySSF474592.09E-17217278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.346219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16220278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9224269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-14225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSLQSHQIVD QTHPSSSLLQ GVRMGRKGNL EVDGISFPVV DLVSVGSNEV DQKPVIHHHI  60
HHIHHHQSVE DAHSTAVAAT TNSVNPVFWQ QTYASDQYNN FQNLGLQENL LELGSEPSAQ  120
LVQHPMFEME NDFQMAATPL MVGSEMNMAG NVNANIPPNY QMSQSMNGLN AISTHQSLYI  180
NSDQVTQTPA LPMPSSANGG NASTGVTAVK PKTRAKRGQA TDPHSIAERL RREKISERMK  240
NLQQLVPNSN KTDKASMLDE IIEYVKFLQV QLKVLSMSRL GSAGTVVPFI SDNHSDEFLE  300
SYGLGELEED SSEYEETMAF EEELARLLDS DIATAMQYLQ AKGLCLMPTS LASAISSCKG  360
SSASIIPPGR NKPDRDDDDN IIIHNTPQ*
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917385.12e-70transcription factor bHLH78
SwissprotQ8S3D51e-55BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A0K9PHX20.0A0A0K9PHX2_ZOSMR; Uncharacterized protein
STRINGXP_008797366.12e-69(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.17e-52LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]