PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma255g00030.1
Common NameZOSMA_255G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 278aa    MW: 31680 Da    PI: 10.2952
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma255g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.48.3e-17389690
              FAR1  6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      YA ++GF+vr+ ++k +  ++e++ +++ Csk+g+++++ ++   +ek++r+  + r gC  ++ +++++ ++ w+v ++ ++HnH+l+
  Zosma255g00030.1  3 YAGNIGFNVRMGSTKIN--DQEMVGQRMLCSKQGYTSTTATAnivNEKKQRRIRNLRSGCLTMIYISLDRsSKLWRVVNFIQHHNHPLV 89
                      ************98887..9999**************9999889888888888899************99999**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-14289IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGYAGNIGFN VRMGSTKIND QEMVGQRMLC SKQGYTSTTA TANIVNEKKQ RRIRNLRSGC  60
LTMIYISLDR SSKLWRVVNF IQHHNHPLVT PSKKRYLPVN RVITPLLRTL FQSINTSNIS  120
SSDQYCVAVQ EVGGFDHIQF TPFDLSNMRR NNRCNIIQRD ADLLIELFKE RKNKSSDFFF  180
SFTRHEDGSV PTREGSRCAS PNVQCNESRA LASSFRWWSA WYLGLVRQDG QKQGTSDSGY  240
GTSVLSSTKY WAMTLSLVEA FHATPTIACL RFQFKER*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PFX80.0A0A0K9PFX8_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-18FAR1-related sequence 5