PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 696aa MW: 78883.3 Da PI: 6.9937

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma249g00080.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.2e-26	109	198	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA +vGF+vr+sks +s+ ++++++r+fvCsk+g++++++ +k+rr+r+++r gCka+++v+++++g+w+v+++ eH H+l Zosma249g00080.1 109 SFYSAYADRVGFRVRNSKSFTSRVDETVIMRRFVCSKQGRPTKKDPFdVTKKRRNRVSSREGCKAMFQVNRRENGRWVVSRCIAEHCHPL 198 5*************************************99887655889999********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-24	109	198	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.9E-18	297	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.878	566	604	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.0E-8	574	603	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0048	579	606	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MMDSVLMHEV DVDVEPNMSF PIEVEDNNMM ETIGQCGREE SMDAPLLGVV ELGEIGVGEV 60 GGVVEVVEEV EGGERGGEMV LMEMDESKME YSSNPAIGLE FESAEAARSF YSAYADRVGF 120 RVRNSKSFTS RVDETVIMRR FVCSKQGRPT KKDPFDVTKK RRNRVSSREG CKAMFQVNRR 180 ENGRWVVSRC IAEHCHPLGV IHNTSPSMLK KLTKKPWELI IGPSASESPK NGLGAGGGVV 240 QSLLEYFKRK QADNPAFFYA LQVDKNNCVS NVYWTDARAK MAYSYFGDAV RLDLSCKENK 300 RLVPFAAFTG VNHHGQLCVF GCAFMTNESE ASFTWLFQTW ITSMSGRCPI SLVTVLDDVI 360 EASSEKVLPS VCHRFCKRDI FSKCKVKLAD TYASHPSFKV EFKKLVNESE SVEQFEVGWN 420 EFLVKYYVEN DVWLQHLYSI RQKWIPTFVR YTFFAEIQTP KLETVHKFFQ RHTITTTTLR 480 DIVTQFDKAI ISQYEIEVLS DSTTICSRPV LQSPSTMEKH ASDVYTREIF DVFQAELAGS 540 SGLLVDKIED ELQNRFRVTK VEDSTFPHIV AYNPSEKIIR CTCCKFEFSG VVCRHILRVC 600 LAVGIMTLPE NYILRRWTKN AKCSLLLSEH NAPFPPDCLK AFKWRCNDLC RDAIRYAEEG 660 ATSTLIYKVA KDALQKAFSD VFASKKYVYS MGPGS*

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MMDSVLMHEV DVDVEPNMSF PIEVEDNNMM ETIGQCGREE SMDAPLLGVV ELGEIGVGEV  60
GGVVEVVEEV EGGERGGEMV LMEMDESKME YSSNPAIGLE FESAEAARSF YSAYADRVGF  120
RVRNSKSFTS RVDETVIMRR FVCSKQGRPT KKDPFDVTKK RRNRVSSREG CKAMFQVNRR  180
ENGRWVVSRC IAEHCHPLGV IHNTSPSMLK KLTKKPWELI IGPSASESPK NGLGAGGGVV  240
QSLLEYFKRK QADNPAFFYA LQVDKNNCVS NVYWTDARAK MAYSYFGDAV RLDLSCKENK  300
RLVPFAAFTG VNHHGQLCVF GCAFMTNESE ASFTWLFQTW ITSMSGRCPI SLVTVLDDVI  360
EASSEKVLPS VCHRFCKRDI FSKCKVKLAD TYASHPSFKV EFKKLVNESE SVEQFEVGWN  420
EFLVKYYVEN DVWLQHLYSI RQKWIPTFVR YTFFAEIQTP KLETVHKFFQ RHTITTTTLR  480
DIVTQFDKAI ISQYEIEVLS DSTTICSRPV LQSPSTMEKH ASDVYTREIF DVFQAELAGS  540
SGLLVDKIED ELQNRFRVTK VEDSTFPHIV AYNPSEKIIR CTCCKFEFSG VVCRHILRVC  600
LAVGIMTLPE NYILRRWTKN AKCSLLLSEH NAPFPPDCLK AFKWRCNDLC RDAIRYAEEG  660
ATSTLIYKVA KDALQKAFSD VFASKKYVYS MGPGS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930351.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_029122440.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0K9PIV5	0.0	A0A0K9PIV5_ZOSMR; FAR1-related sequence 3
STRING	ORGLA11G0071600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-141	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma249g00080.1