PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma248g00050.1

Common Name

ZOSMA_248G00050

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 301aa MW: 33956.1 Da PI: 7.1647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma248g00050.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.8	1.6e-56	7	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv++yL +kv+++++ + +++ +vd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg+r+nrat++gyWkatgkdke++ Zosma248g00050.1 7 LPPGFRFHPTDEELVTHYLSNKVSDDRFVC-RAVGDVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGSRTNRATEAGYWKATGKDKEIY 98 79***********************999.88***********888999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++lvg+kktLvfy grap+gekt+Wvmheyr+ Zosma248g00050.1 99 R-GRSLVGMKKTLVFYGGRAPRGEKTNWVMHEYRM 132 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-63	4	164	IPR003441	NAC domain
PROSITE profile	PS51005	58.126	7	164	IPR003441	NAC domain
Pfam	PF02365	5.2E-30	8	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEQHMDLPPG FRFHPTDEEL VTHYLSNKVS DDRFVCRAVG DVDLNKCEPW DLPWRAKMGE 60 KEWYFFCVRD RKYPTGSRTN RATEAGYWKA TGKDKEIYRG RSLVGMKKTL VFYGGRAPRG 120 EKTNWVMHEY RMESTTTISS SSYNNLHKPL KLNCEWVLCR VFQKSTSMAG GGKKTYGNEL 180 GFCQNSVNLS GVATPAVIAQ QNIPCFSNSS TEHFDTNRLF STPDPSSIHM IFSGGCKVER 240 DVVTVSQETG VTSDANPEIS SVFSSHETGK QRRIDSGDGE ILPSNPAPEM TLDDCYFWNY 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-56	2	167	10	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008802569.1	1e-103	NAC domain-containing protein 100-like
Refseq	XP_008802570.1	1e-103	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-95	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0K9PGU4	0.0	A0A0K9PGU4_ZOSMR; NAC domain-containing protein 3
STRING	XP_008802569.1	1e-102	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-97	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Zosma248g00050.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]