PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma246g00310.1 | ||||||||
Common Name | ZOSMA_246G00310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | B3 | ||||||||
Protein Properties | Length: 498aa MW: 57312.3 Da PI: 7.676 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.4 | 8.1e-11 | 28 | 102 | 15 | 97 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +p f+ + ++e+ ++ d+ g sW +k+ r++ +++ +GWk+F+k +L++g +++F ++g+++f v +f Zosma246g00310.1 28 KMDIPPAFIWNL--IPEK--IAKVWDSLGHSWLFKI--RGTHPNFYFDEGWKKFAKTFNLEVGYMLLFCYEGNMNF--SVIIF 102 368888888544..3333..68999***********..***99*****************************9999..66666 PP | |||||||
2 | B3 | 46.3 | 7.8e-15 | 269 | 354 | 4 | 91 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 +l+ps+ + l++p +f e+ g++ e tl l+d++++ We +l+ +++r + ++GWkeF+ n+Lk gD + Fk+ ++ ++ + Zosma246g00310.1 269 TLMPSHLQGRYYLYIPVRFREQTGISDE--HTLFLKDPNNNLWETQLS-HSTKNRLLVSRGWKEFCLNNKLKLGDDCEFKFCSElKDNK 354 7899***************988887744..49***************6.55556899***********************776555443 PP | |||||||
3 | B3 | 31.1 | 4.2e-10 | 392 | 473 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++s+ l ++++ +p+ f+++ ++ +++ t+ l+d ++g v l+++ + + ++ + Wk+F++ + kegD++ F+++++ Zosma246g00310.1 392 TVTSYCLVQNNIAIPNAFVTATDLLHKN--TVELKDdTDGYICPVDLRHSTRNRVIFGNSSWKKFCSRYNFKEGDILAFQFESK 473 5789999999*********999888555..67777769999999999877777778889*********************8764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-16 | 12 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-17 | 13 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.35E-15 | 15 | 102 | No hit | No description |
SMART | SM01019 | 8.1E-7 | 17 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-8 | 26 | 102 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.362 | 52 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 262 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-19 | 263 | 363 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.38E-15 | 264 | 363 | No hit | No description |
SMART | SM01019 | 1.1E-9 | 266 | 365 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.283 | 266 | 365 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-13 | 269 | 354 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-11 | 385 | 487 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-12 | 385 | 474 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.51E-9 | 387 | 487 | No hit | No description |
PROSITE profile | PS50863 | 10.405 | 388 | 490 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0012 | 389 | 490 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-7 | 392 | 473 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MSDMTGTRFN SHTKPMFFCI LKPDFLSKMD IPPAFIWNLI PEKIAKVWDS LGHSWLFKIR 60 GTHPNFYFDE GWKKFAKTFN LEVGYMLLFC YEGNMNFSVI IFGNNSCLKE YALEFIDKSK 120 KNTIERLYTR DDLDKSIDHK KIKLEAPNPS SLTEIHNAQF QQGCGNQRLE HLVKMPEKFI 180 ATTIVADNGS AFSLTLDSSS RTKEEQRHEH ACLPLKIPLC NHTDTDGTVL NTVQPYDHDD 240 EQQAAQASNT INDGSMICAE NAPPSYRITL MPSHLQGRYY LYIPVRFREQ TGISDEHTLF 300 LKDPNNNLWE TQLSHSTKNR LLVSRGWKEF CLNNKLKLGD DCEFKFCSEL KDNKKILQVE 360 IFKKPQRERL KAIKIKKTCG TNLSSTPSFW ITVTSYCLVQ NNIAIPNAFV TATDLLHKNT 420 VELKDDTDGY ICPVDLRHST RNRVIFGNSS WKKFCSRYNF KEGDILAFQF ESKSGSNGID 480 TFHFRILQEP PLQDEIE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PGY8 | 0.0 | A0A0K9PGY8_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma246g00310.1 |