PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma246g00260.1
Common NameZOSMA_246G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 331aa    MW: 36726.3 Da    PI: 4.9967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma246g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08232273955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + RR++i++++  L+el+P++     +K++ +++Lek + Y+k Lq
  Zosma246g00260.1 232 AKMRREKIRERLKVLQELVPNN-----TKVDLVTMLEKSISYVKFLQ 273
                       699******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.31223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-11224277No hitNo description
SuperFamilySSF474591.02E-12225282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11226282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-6233273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAISNFSHGS MFHCDLPGGN LDYVSPGLFG LMDQTDDCYD MERLLDYSIH PHTHLMSILE  60
YQNIEGGGSG LSEPVFAVDF PPTRSTGELL LPRYNNKPAV SNYGNDCNYP AWYDSTSSKS  120
NMVSFDRLGN LSDVPNQLLQ GTGVIAYNSE ETAMEDRILE EQLRWLYSGD NIDHCDGLLG  180
SALKRPSKAS IDDDTVANKK RRCIFTSGGG GMKRKSSSKT MTACKDPQII AAKMRREKIR  240
ERLKVLQELV PNNTKVDLVT MLEKSISYVK FLQLQVKVLE TDEIWAGNDN RNGGRTLADL  300
KDEEKEAIDA ILSSNVQTCS STASVHLEQY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PGY30.0A0A0K9PGY3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-31RHD SIX-LIKE 1