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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma23g01450.1 | ||||||||
Common Name | ZOSMA_23G01450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | Whirly | ||||||||
Protein Properties | Length: 256aa MW: 28511.5 Da PI: 9.038 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 196.9 | 2.9e-61 | 82 | 220 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 s+yk+kaal+ ++ p+f+ ldsg+ k+ r+G++ll++a++++ r+ydW++kq+f+ls+ ev++++ l +k+sceffhdp++++s+eGk+rk l Zosma23g01450.1 82 SIYKGKAALTASPKPPEFTLLDSGAYKVLREGAVLLQFAPSVGIRQYDWSRKQVFSLSVPEVGSILCLDAKDSCEFFHDPFKGKSEEGKIRKIL 175 7********************************************************************************************* PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 kvePlpdGsG+f+nlsv+n ++++e++++P++kaefa+l+s+++ Zosma23g01450.1 176 KVEPLPDGSGHFFNLSVQNRTMNVDENIYIPITKAEFAILKSAFN 220 ******************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.3E-74 | 72 | 242 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 8.63E-71 | 74 | 253 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 5.7E-59 | 83 | 218 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEFSLQNPTI AAKTLTTTTL FSSILPFHHP QTLTLPKRKN SLSTKSLHSI ISCNYYDQQK 60 LTVSSAADEV LHQSPRVYVG HSIYKGKAAL TASPKPPEFT LLDSGAYKVL REGAVLLQFA 120 PSVGIRQYDW SRKQVFSLSV PEVGSILCLD AKDSCEFFHD PFKGKSEEGK IRKILKVEPL 180 PDGSGHFFNL SVQNRTMNVD ENIYIPITKA EFAILKSAFN FIVPHLLGWA AFANSIKPES 240 SSNNTRYDTE QEWGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 2e-94 | 74 | 253 | 35 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 2e-94 | 74 | 253 | 35 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 2e-94 | 74 | 253 | 35 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 2e-94 | 74 | 253 | 35 | 218 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026665922.1 | 1e-107 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q66GR6 | 4e-99 | WHY3_ARATH; Single-stranded DNA-binding protein WHY3, chloroplastic | ||||
TrEMBL | A0A0K9PHQ3 | 0.0 | A0A0K9PHQ3_ZOSMR; DNA-binding protein p24 | ||||
STRING | XP_008809721.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 1e-102 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Zosma23g01450.1 |
Publications ? help Back to Top | |||
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