PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 329aa MW: 37856.7 Da PI: 4.6108

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma23g01260.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	58	111	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA+ lgL+ rqV vWFqNrRa++k Zosma23g01260.1 58 KKRRLSVEQVKTLEKNFEVENKLEPERKVKLAQDLGLQPRQVAVWFQNRRARWK 111 456899***********************************************9 PP
2	HD-ZIP_I/II	129.2	1.7e-41	57	149	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe e+kLeperKv+la++LglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd++k++ ++L +e+++L +elke Zosma23g01260.1 57 EKKRRLSVEQVKTLEKNFEVENKLEPERKVKLAQDLGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDTIKNNYDKLVQEKDHLLAELKE 149 69***************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.18E-19	49	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	53	113	IPR001356	Homeobox domain
SMART	SM00389	1.4E-16	56	117	IPR001356	Homeobox domain
Pfam	PF00046	7.8E-16	58	111	IPR001356	Homeobox domain
CDD	cd00086	3.64E-16	58	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-19	60	120	IPR009057	Homeodomain-like
PRINTS	PR00031	1.7E-5	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.7E-5	93	109	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.7E-15	113	154	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MKRPRNSNSL SSEDTTTVGS FQSILDGLGE EEEDEMMLIM GDDAAIGVGT TSLNSVEKKR 60 RLSVEQVKTL EKNFEVENKL EPERKVKLAQ DLGLQPRQVA VWFQNRRARW KTKQLERDYG 120 VLKANYDTIK NNYDKLVQEK DHLLAELKEL KTKLDGKNSH CLIKEEIVAH EDEYDVKVNK 180 DEMNLHRRSK DVDENENDED DAEKHILAVL YNYKDGLSDS DSSAILNDLS SHSDEGLPNK 240 IHNYDHDEEQ KQLLLADFNY TSSSSTCSQF PHHTVGNGRD DGLSYYHYQL PAHQYQQILP 300 KMEENTFLNG NEFFSDDPSP ELLSNWWE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	RRARWKTKQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00587	DAP	Transfer from AT5G65310	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PJP3	0.0	A0A0K9PJP3_ZOSMR; Homeobox-leucine zipper protein ATHB-16

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	3e-46	homeobox protein 5

Link Out ? help Back to Top
Phytozome	Zosma23g01260.1