PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma23g01210.1
Common NameZOSMA_23G01210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 311aa    MW: 34798 Da    PI: 6.4042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma23g01210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13104155155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  Zosma23g01210.1 104 QRMTHIAVERNRRKQMNEYLNVLRSLMPSS---YVQRGDQASIVGGAINFVKELE 155
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.15E-13102159No hitNo description
SuperFamilySSF474591.44E-17103171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.332103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15104173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-11104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-11109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MALEAVVFQH STKPSSGNPW LYDQIEVGEA NKAMDLQQNG SFLNSFHERW DATNLDDWNV  60
ITTRDGNGMG VPVETETSTP VVGGGRKKRR RTKTCKNKEE VENQRMTHIA VERNRRKQMN  120
EYLNVLRSLM PSSYVQRGDQ ASIVGGAINF VKELEQQLQS LEAQKRSIQQ STATIDNSSA  180
QPFAEFFTFP QYSTCTSSSS NSTSSINETA TENRSTIADI EVTMVESHAN LKAFCRRRPK  240
QLLKMVIGLQ NIKLTPLHLN VTTIDDKALY SFSLKVEDDC QLTSVDEVAG FVHQLLGRIE  300
QEECVGFNHG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104115RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266731.11e-111PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T47e-77BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0K9PJN70.0A0A0K9PJN7_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
STRINGXP_010266731.11e-110(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]