PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma23g00730.1
Common NameZOSMA_23G00730
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 287aa    MW: 33373.2 Da    PI: 10.2017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma23g00730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.7e-06730126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+lC  ++r G C++   C+FaHg
  Zosma23g00730.1  7 YKTKLCVLYQR-GRCSR-QACSFAHG 30
                     9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.47E-5436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-10536IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389632IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTERKLYKTK LCVLYQRGRC SRQACSFAHG NAELRRFPSE GSFDGRQEYQ NSDLRDKLER  60
RYSPYRKYSP GRNVHGRHDF RNHKQVSHDR GYSPSRSPVR RSERQSDLSI SPRISDGDEG  120
KFKDRNKDPY KERDLQLKLR EAKRDVQYLE DNRNQLMSAL DEKKEEVAKL SSTIEEIEAQ  180
LKKERDDCKR SISKNKKFNK ALGRYLQAQV ELKRSQSKLQ RVADQLDSDN LKSGVNEEDS  240
SINIISDGDY NQFSKHEKKN GASPPKKRSR LSIGTSEEMK SGNLLY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801339.12e-89zinc finger CCCH domain-containing protein 13
TrEMBLA0A0K9PHH20.0A0A0K9PHH2_ZOSMR; Zinc finger CCCH domain-containing protein 13
STRINGXP_008801339.18e-89(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-39C3H family protein