PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma239g00140.1 | ||||||||
Common Name | ZOSMA_239G00140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 193aa MW: 22146.3 Da PI: 4.3155 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 150 | 177 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 4 ahnerErrRRdriNsafeeLrellPk.a 30 a n +Er+RR++iN+++ L +l+P a Zosma239g00140.1 150 ARNFNERKRRRDINNKIKALHDLIPAvA 177 7899*********************855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.41E-7 | 144 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-8 | 145 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.661 | 146 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.84E-5 | 149 | 178 | No hit | No description |
Pfam | PF00010 | 5.7E-6 | 150 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MNFNGEEWWN NQVQESDEWK ELSAWISKEI IEKQDVDDMG RFPGVVLPDV AEMENKATHV 60 ATNFSTLPPL LFQINPSEIQ EGFLQDYQVT DVTPPLITNT NYHAFDDDDD DDDDNDNDDD 120 EGKIGANDKK RIRLTDNQDV MPSSSRQASA RNFNERKRRR DINNKIKALH DLIPAVAKRL 180 VKSVCWTKYT TT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 159 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PHF2 | 1e-139 | A0A0K9PHF2_ZOSMR; Uncharacterized protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma239g00140.1 |