PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Zosma239g00140.1

Common Name

ZOSMA_239G00140

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 193aa MW: 22146.3 Da PI: 4.3155

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma239g00140.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.7e-08	150	177	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 4 ahnerErrRRdriNsafeeLrellPk.a 30 a n +Er+RR++iN+++ L +l+P a Zosma239g00140.1 150 ARNFNERKRRRDINNKIKALHDLIPAvA 177 7899*********************855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.41E-7	144	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-8	145	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.661	146	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.84E-5	149	178	No hit	No description
Pfam	PF00010	5.7E-6	150	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MNFNGEEWWN NQVQESDEWK ELSAWISKEI IEKQDVDDMG RFPGVVLPDV AEMENKATHV 60 ATNFSTLPPL LFQINPSEIQ EGFLQDYQVT DVTPPLITNT NYHAFDDDDD DDDDNDNDDD 120 EGKIGANDKK RIRLTDNQDV MPSSSRQASA RNFNERKRRR DINNKIKALH DLIPAVAKRL 180 VKSVCWTKYT TT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	159	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PHF2	1e-139	A0A0K9PHF2_ZOSMR; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Zosma239g00140.1