PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma234g00280.1 | ||||||||
Common Name | ZOSMA_234G00280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | WOX | ||||||||
Protein Properties | Length: 63aa MW: 7028.22 Da PI: 4.9024 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.4 | 4.4e-07 | 19 | 62 | 6 | 44 |
S--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHH CS Homeobox 6 tftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqV 44 ++t+ ql++Le +F++ n +p++ +++e++ + +++e++V Zosma234g00280.1 19 NPTTMQLQILEGMFKEcNGTPNKVKIKEITFEFlqygEISETNV 62 79*************99************988777777777776 PP | |||||||
2 | Wus_type_Homeobox | 47.2 | 5.5e-16 | 19 | 62 | 7 | 50 |
Wus_type_Homeobox 7 tPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNV 50 +Pt+ Q++iLe ++k+ tPnk +i++it e +yG+i+++NV Zosma234g00280.1 19 NPTTMQLQILEGMFKECNGTPNKVKIKEITFEFLQYGEISETNV 62 8******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 9.5E-5 | 19 | 62 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MEMVAPAGPM YVKWKSVGNP TTMQLQILEG MFKECNGTPN KVKIKEITFE FLQYGEISET 60 NV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PHY9 | 9e-38 | A0A0K9PHY9_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 3e-12 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
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Phytozome | Zosma234g00280.1 |