PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma230g00110.1
Common NameZOSMA_230G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 689aa    MW: 75924.7 Da    PI: 6.3006
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma230g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-10272328155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Zosma230g00110.1 272 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 328
                       57*******************4444.2455535555.7799999*************98 PP
2AP246.77.8e-15400451155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zosma230g00110.1 400 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 451
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.18E-19272338No hitNo description
SuperFamilySSF541713.47E-14272338IPR016177DNA-binding domain
PfamPF008472.8E-8272328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-11273337IPR001471AP2/ERF domain
SMARTSM003803.7E-22273342IPR001471AP2/ERF domain
PROSITE profilePS5103217.016273336IPR001471AP2/ERF domain
PRINTSPR003678.9E-5274285IPR001471AP2/ERF domain
PRINTSPR003678.9E-5318338IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17400461IPR016177DNA-binding domain
CDDcd000188.30E-25400461No hitNo description
PfamPF008479.7E-10400451IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-18401460IPR001471AP2/ERF domain
PROSITE profilePS5103219.045401459IPR001471AP2/ERF domain
SMARTSM003801.5E-33401465IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MSSSINNWLG FSLEPQEQQT GNLSQAQRPA GSHLIDDVAV AGDCYDLTQN TTGDGPFGIL  60
EPGFNNNIQV WNMKGLDYKG NSSELSMLVD GSNSNNTNME TDEPKLEDFL GGHSFSDHRQ  120
RLTAGFDNSD NYTFSNCSLQ LPPPEVTSTT ANSSSNSSIG LSMIKTWLRN QPAPVSSTQQ  180
DHHHVKNADL ISGSGVSVGV DVAVSQPHPN NTQSLSLSMS TGVGGGGGAP TLMADNKQKG  240
SSSDHSIIDP QSGVTGDAGP RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  300
TRKGRQGGYD KEDKAARAYD LAALKYWGST TTTNFPISNY DKELEDMKNM TRQEYVASLR  360
RYAIRTYDRP SSDFFSIFVY DRVNSDHRNR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR  420
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVNSILE SSALPIGGAA  480
KRLKEVATGD PNIDVGVDGR MLIGSDYNFA DHHHHQQQLG WPSITFQQAQ ALAQQQQQQQ  540
QQQQSMGMYQ NYSQRGWCKQ EQEGFQDLHQ LHLGSGNTHN FFQTSGGFHN PMGMDGNGYM  600
SQMNINMMPI NNNNNNNNLG SSSSSYENML ATSSYNYLSQ HSPGDDQNPS SNNWIQQQSI  660
PSPNEHDNDN VASAATAGQT IFTVWNDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804192.20.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0K9PKD40.0A0A0K9PKD4_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGXP_008804192.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-121AP2 family protein