PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma22g01150.1
Common NameZOSMA_22G01150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 201aa    MW: 23704.5 Da    PI: 10.2508
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma22g01150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.61.4e-121550742
                     HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       r  tf kR +g lKK +EL +LCd+e++vi+  +
  Zosma22g01150.1 15 ASRRQTFRKRSKGFLKKVSELNILCDVEACVILKNP 50
                     567779**************************8655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-19184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.512147IPR002100Transcription factor, MADS-box
CDDcd002664.54E-18283No hitNo description
PRINTSPR004041.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.8E-131353IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRTKVKLEW MQNFASRRQT FRKRSKGFLK KVSELNILCD VEACVILKNP FENKLEIWPN  60
QIGDVQRILM RVDQTPEIER NKNIINLGSY LREKISKIQA QITKVAKQTQ AMERNKLLFE  120
YMKGKELTDI KEETTIYNLI EMINSKLHVG SYRLRHMKED RKRRGKSLLW DINDAYDPST  180
PSEDFLYYAS YAMESKSKTK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PIN31e-146A0A0K9PIN3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.11e-20AGAMOUS-like 92