PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma22g00870.1
Common NameZOSMA_22G00870
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 567aa    MW: 63505.3 Da    PI: 4.8794
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma22g00870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.71.1e-1241965662374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA a+s+g+ e+++a+++++++l+s +gdp qRlaa+++e+La+   +s++ +ykal+++e +   +s++l+a+++++e++P+++f+ 
  Zosma22g00870.1 196 KQLLFHCASAFSEGNYEEVSAFITEIRQLVSIHGDPSQRLAACLVEGLASSFESSGKDIYKALSCKEPP---TSDRLSAMQILFEACPCFNFGI 286
                      589*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                       +aN aI ea+e e++vHiiDfdi+qG+Q+++Llq L++R+++  ++RiT+v++pes+  s   l  +g+rL+k+Ae l++ fef + +a+++e
  Zosma22g00870.1 287 TAANGAITEALEDEKKVHIIDFDINQGAQYVTLLQDLSKRTKQLLRVRITAVDDPESVqrSIGGLTMIGKRLEKVAEDLHIAFEFVP-IASKTE 379
                      ********************************************************9988899************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d+++ +L+++++Eal+Vn++++lh+++desvs++++rd++L++vk+l+Pk+v+++eq++++n+++F  rf+e  +yy a+f+sl+a+lpr+s +
  Zosma22g00870.1 380 DVTTAMLACRSDEALVVNFAYSLHHMPDESVSVANQRDHLLRMVKGLKPKLVTIIEQDVNTNTAPFYPRFVEVYNYYLAVFESLDATLPRDSLD 473
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r++vEr++l+++i n+vaceg++r+er e ++kWr+r+++aGF + p+s+++ + +++ +++ + d y+v+ee g++ +gW+d+ L+s SaW+
  Zosma22g00870.1 474 RMNVERHCLAKDIINIVACEGTDRIERYEPAGKWRMRMNMAGFVSSPMSSYVKQAIRAQVKNSYCDRYKVKEEAGTINFGWEDKILISSSAWK 566
                      ****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.005169546IPR005202Transcription factor GRAS
PfamPF035143.8E-122196566IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAFIRHVDSS PASYYSGRSS SNTPNFSNQV FRSDNSDINQ RQFEILKQNY PNGIPVSLYH  60
HPQHQMSSGV STISYPSNPY VSCFSNGSNN KSQSSFSSIS HQTSGSISDV QTPEIEEPCY  120
SNENDLRCKL QELERELFND DEVNGDFINE CDDMECMDDD WIKPMKNLLL IPPSPTESSS  180
DSNSNPISAG ENRTPKQLLF HCASAFSEGN YEEVSAFITE IRQLVSIHGD PSQRLAACLV  240
EGLASSFESS GKDIYKALSC KEPPTSDRLS AMQILFEACP CFNFGITAAN GAITEALEDE  300
KKVHIIDFDI NQGAQYVTLL QDLSKRTKQL LRVRITAVDD PESVQRSIGG LTMIGKRLEK  360
VAEDLHIAFE FVPIASKTED VTTAMLACRS DEALVVNFAY SLHHMPDESV SVANQRDHLL  420
RMVKGLKPKL VTIIEQDVNT NTAPFYPRFV EVYNYYLAVF ESLDATLPRD SLDRMNVERH  480
CLAKDIINIV ACEGTDRIER YEPAGKWRMR MNMAGFVSSP MSSYVKQAIR AQVKNSYCDR  540
YKVKEEAGTI NFGWEDKILI SSSAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5520156525378Protein SCARECROW
5b3h_A5e-5520156524377Protein SCARECROW
5b3h_D5e-5520156524377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925930.10.0scarecrow-like protein 1
RefseqXP_010925931.10.0scarecrow-like protein 1
RefseqXP_010925932.10.0scarecrow-like protein 1
RefseqXP_019707392.10.0scarecrow-like protein 1
RefseqXP_019707393.10.0scarecrow-like protein 1
RefseqXP_019707394.10.0scarecrow-like protein 1
RefseqXP_019707395.10.0scarecrow-like protein 1
RefseqXP_019707396.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0K9PIA20.0A0A0K9PIA2_ZOSMR; GRAS family transcription factor
STRINGGSMUA_Achr3P02410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-176SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]