PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma22g00540.1

Common Name

ZOSMA_22G00540

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bZIP

Protein Properties

Length: 425aa MW: 45833.4 Da PI: 7.058

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma22g00540.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36	1.5e-11	227	285	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l +l+ +l+se+ Zosma22g00540.1 227 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTMLQRDTTSLTSEN 285 9*******************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-16	223	287	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.174	225	288	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.09E-11	227	282	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.0E-11	227	283	No hit	No description
Pfam	PF00170	8.7E-10	227	285	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.64E-25	228	277	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MDKERSPGGG RGLPPFSNSR YSPFPSPTAN FPLKSEASPS SSSSVAAPGS GSNHPGFSQD 60 VSKMPDFPTR NAGHRRAHSE ILCLPDDISF DSDLGVVGGN DLPSLSDEND DDIVSMYMDM 120 EKYVAFSASS AGGLSEGFGN GPSNNVSVNA DTVQGGSIGP SQVESSGAGT SSQRPNRARH 180 QHSQSMDGST SIKTELLGST SDGSSLADSK KAMSAAKLAD LALVDPKRAK RIWANRQSAA 240 RSKERKMRYI SELERKVQTL QTEATTLSAQ LTMLQRDTTS LTSENSELKL RLQTTEQQVR 300 LQDALNDALR DEVQRLKVLT GQPIPNGTQI MNYGSSSFDP TSQPFYPQNH NMQSMLASHQ 360 LQQLNLHSQQ QQQVGHPNHL HQQIPSQHHQ QFQHSEVKIR APATPTNNRL DGSSGASSPS 420 QIKE*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MDKERSPGGG RGLPPFSNSR YSPFPSPTAN FPLKSEASPS SSSSVAAPGS GSNHPGFSQD  60
VSKMPDFPTR NAGHRRAHSE ILCLPDDISF DSDLGVVGGN DLPSLSDEND DDIVSMYMDM  120
EKYVAFSASS AGGLSEGFGN GPSNNVSVNA DTVQGGSIGP SQVESSGAGT SSQRPNRARH  180
QHSQSMDGST SIKTELLGST SDGSSLADSK KAMSAAKLAD LALVDPKRAK RIWANRQSAA  240
RSKERKMRYI SELERKVQTL QTEATTLSAQ LTMLQRDTTS LTSENSELKL RLQTTEQQVR  300
LQDALNDALR DEVQRLKVLT GQPIPNGTQI MNYGSSSFDP TSQPFYPQNH NMQSMLASHQ  360
LQQLNLHSQQ QQQVGHPNHL HQQIPSQHHQ QFQHSEVKIR APATPTNNRL DGSSGASSPS  420
QIKE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268265.1	1e-143	PREDICTED: probable transcription factor PosF21
Refseq	XP_010268266.1	1e-143	PREDICTED: probable transcription factor PosF21
Refseq	XP_010268267.1	1e-143	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-118	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0K9PKK0	0.0	A0A0K9PKK0_ZOSMR; BZIP transcription factor
STRING	XP_010268265.1	1e-143	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-120	bZIP family protein

Link Out ? help Back to Top
Phytozome	Zosma22g00540.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]