PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma228g00180.1
Common NameZOSMA_228G00180
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 454aa    MW: 49522.6 Da    PI: 5.2228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma228g00180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31236294259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Zosma228g00180.1 236 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRSDPNMLVITYTSEHNHP 294
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.96230296IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-31233296IPR003657WRKY domain
SuperFamilySSF1182902.48E-26233296IPR003657WRKY domain
SMARTSM007747.5E-38235295IPR003657WRKY domain
PfamPF031061.0E-25237294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MESDQGGDLG DIIRASSRGC GGNLLEAKTN KIKTKNTSDW QFPSLTSLTD TGIGFPSLST  60
DASFNSGFGD PFFNLGRDPF MVHELSAGEA AEEEESMGVE IGNGHVGVHV VGGGHVDSNT  120
TSMGNDSDFV NQKMILQPIL SRFLEISPTT ASPVVSLESI RHHHQPPILP AASVSAINNV  180
SSRCLSDHVP ALQISSTLSS PRNPGIKRRK SQTKKVVCIP APAASGSRPT GEVVPSDLWA  240
WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRSDP NMLVITYTSE HNHPWPTQRN  300
ALAGSTRAQA AKTNGWSLKN SGQKHNPRVS GQEDKHKEMA NSSAPVKEEA VEMKKSTPVS  360
SIDKTDDNYN YICNYNLDHS NYINYSTTTT TTTTTPPTTS SFPESRRSVD DFFAELTELG  420
VSDPLEMFSR QLLEEEEEEE EEEVEDDEDD YAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-25211297380Disease resistance protein RRS1
5w3x_D7e-25211297380Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PIV40.0A0A0K9PIV4_ZOSMR; Putative WRKY transcription factor 35
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-67WRKY DNA-binding protein 35