PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma224g00390.1
Common NameZOSMA_224G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 298aa    MW: 33670.3 Da    PI: 10.4842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma224g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31218275258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       +D ++WrKYGqK++kgs++pr+YY+C+s+ gCp++k+ver+ +dp+++++tYeg+H h
  Zosma224g00390.1 218 SDDFSWRKYGQKPIKGSPHPRGYYKCSSSrGCPARKHVERAVDDPSMLIVTYEGDHSH 275
                       69*************************999***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-14182215IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-32204276IPR003657WRKY domain
PROSITE profilePS5081130.389212278IPR003657WRKY domain
SuperFamilySSF1182902.35E-26215276IPR003657WRKY domain
SMARTSM007741.9E-37217277IPR003657WRKY domain
PfamPF031067.4E-27219275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEQLRDFSIS GMAYGRVEKA VEEAAYAGMR SMEELVALLS REDKQRKTDK VAVDVDEHYR  60
KVTDNVVSRF KTVISLLDRK IRTGHARFRH SPILLSHKTP NRKDATVVTV KEELATSEDH  120
HRRRMDPVRV YCPKPLQRQL PPLPHNHHQM IMDFASPSMP SKTSSSAFQV TTQHKRKSCR  180
NDNPLGSGSC HCSKKRKTRV KRTVRVPATS TKLSDIPSDD FSWRKYGQKP IKGSPHPRGY  240
YKCSSSRGCP ARKHVERAVD DPSMLIVTYE GDHSHGNSSE HNTTAITTTP PSFVSKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21205275271WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174196KRKSCRNDNPLGSGSCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074398.11e-82probable WRKY transcription factor 7
SwissprotQ9STX01e-67WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0K9PL880.0A0A0K9PL88_ZOSMR; Putative WRKY transcription factor 7
STRINGXP_009604893.19e-82(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-57WRKY DNA-binding protein 15