PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma217g00030.1

Common Name

ZOSMA_217G00030

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 286aa MW: 31488.3 Da PI: 6.8556

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma217g00030.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44	7.1e-14	175	267	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+ +GFsvr ++k+ + ++ +++++ Csk+g+++ t+ ++r + ++r gC+ ++k k+ + +++w+ ++++ +HnH l+ Zosma217g00030.1 175 YYDFASAMGFSVRLGSTKNIldkeSGQNILIMKRLLCSKQGSPSLLLPPTNGTKRMNDVSRYGCQESVKFKRIDrSDHWVTDNINFDHNHLLT 267 999********999877666445566689**********999999******************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-10	175	267	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MIILQLVVDF STSLDPDVVA STIFESDFVQ CTSVEMRKSS ANMSYGTAKT PNSLNFHFNF 60 PQCQTNVNPT AFNVDVSTSL DPDIVGSTIF DSEFVQCTSA DIRESSVDIR ESFANMSCGT 120 AKTLNNHSKR KSSSPGQYPI SPDHENGFSS YSQSNKPCPI VGHVFPSFEM VVQSYYDFAS 180 AMGFSVRLGS TKNILDKESG QNILIMKRLL CSKQGSPSLL LPPTNGTKRM NDVSRYGCQE 240 SVKFKRIDRS DHWVTDNINF DHNHLLTTSS KNSIPSNKSV NIANL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC256211	1e-108	AC256211.1 Zostera marina clone XTP08-D02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PJS8	0.0	A0A0K9PJS8_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	2e-09	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Zosma217g00030.1