PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma214g00460.1
Common NameZOSMA_214G00460
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 292aa    MW: 32689.8 Da    PI: 8.2096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma214g00460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08856254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      +  +  rE+ RR r+N+ f eL   l ++     +K +Ka+iL+ A++ +k+L
  Zosma214g00460.1  8 KNLKADREKSRRCRLNTQFVELENALDPD----RPKSDKATILTDAIQTLKNL 56
                      556778********************997....79*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.376656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-11776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-5761No hitNo description
PfamPF000102.0E-6856IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-11979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-41262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGDHFVRKNL KADREKSRRC RLNTQFVELE NALDPDRPKS DKATILTDAI QTLKNLTAEV  60
SRLKAEYTSL SDESHELTQE KNELREEKLL LKSDTDCLNS QYQQQLRVML PWTSMDPASL  120
VAPPLPYPYA IPSAPIPMHP LLHPYQFFGN AGVPNPCPPF MPCRPPSKTQ VENSVNPRVP  180
SDTQPIRSRS QTPKVQEVIS KFSDGQHENS KKVECFSNLA TKLELKTPGS DKSSQSKSTH  240
KQESCFCSRR KKSPRKINDF SEDSDLSRCS SSHVLPDYSS ESVGDASVAN S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383990.16e-73PREDICTED: transcription factor bHLH121
RefseqXP_009383993.16e-73PREDICTED: transcription factor bHLH121
SwissprotQ9LT233e-60BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0K9PK590.0A0A0K9PK59_ZOSMR; BHLH transcription factor
STRINGXP_008336910.18e-72(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-40bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]