PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma214g00260.1 | ||||||||
Common Name | ZOSMA_214G00260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 191aa MW: 21274.6 Da PI: 10.4289 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.2 | 6.1e-08 | 14 | 61 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC.HHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsK.aeiLekAveYIksL 54 + +Er+RR +++s +L +l+Pk+ s lsK + L +A+eYIk++ Zosma214g00260.1 14 RKSVERNRRLHMKSLCLKLFSLIPKN---ASSTLSKqRDHLNLATEYIKEM 61 5789*********************8...6777777369**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.56E-4 | 7 | 66 | No hit | No description |
PROSITE profile | PS50888 | 9.978 | 9 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-10 | 10 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-9 | 11 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-5 | 15 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MKKKSFEEAR KLDRKSVERN RRLHMKSLCL KLFSLIPKNA SSTLSKQRDH LNLATEYIKE 60 MKKKVEGLKR RKKQMLASGA GAGASSSSSG DDHTSSSEKK DVIQKLPIIE IRQVNDSIAE 120 IVVICGADIR SVFYQLINIV EEEGAQVVNA SSAVVGDKIF HTVHSNIKSP RIGLDSSRML 180 ERLKNLVQEE * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PK45 | 1e-134 | A0A0K9PK45_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-18 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma214g00260.1 |