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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma20g01410.1 | ||||||||
Common Name | ZOSMA_20G01410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bZIP | ||||||||
Protein Properties | Length: 200aa MW: 23143.8 Da PI: 5.6084 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.3 | 1.4e-12 | 75 | 122 | 3 | 50 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++++ r+ N+eA r++R++Kka++++Le++vkeL + N+ Lkk+l+ Zosma20g01410.1 75 RSRKHRKTLGNKEAVRKYREKKKAYTDNLEDEVKELRKTNMWLKKKLQ 122 568899***************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-12 | 68 | 139 | No hit | No description |
SMART | SM00338 | 1.8E-10 | 70 | 140 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.094 | 75 | 122 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 8.1E-11 | 77 | 122 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-9 | 77 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEDGGDDLST QFLLSNSEIE ELLRSTCTHT HTCNSSSRDD NTTGHTHTCY HTHTRVIKPA 60 EEEDEEEQEE EEEGRSRKHR KTLGNKEAVR KYREKKKAYT DNLEDEVKEL RKTNMWLKKK 120 LQGQVVLQAE VLRLRSLLDH FRGEIEGELG RYPFVKSQYN DPLLMINGLE KNQCLPAMAS 180 CEMDENCNLV PFNYHVTRG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027354369.1 | 5e-44 | basic leucine zipper 23-like isoform X1 | ||||
Refseq | XP_027354370.1 | 5e-44 | basic leucine zipper 23-like isoform X2 | ||||
Refseq | XP_027354371.1 | 5e-44 | basic leucine zipper 23-like isoform X3 | ||||
Refseq | XP_027354372.1 | 5e-44 | basic leucine zipper 23-like isoform X1 | ||||
Refseq | XP_027354373.1 | 5e-44 | basic leucine zipper 23-like isoform X1 | ||||
TrEMBL | A0A0K9PN78 | 1e-146 | A0A0K9PN78_ZOSMR; Basic-leucine zipper (BZIP) transcription factor family | ||||
STRING | XP_006486739.1 | 2e-42 | (Citrus sinensis) | ||||
STRING | Gorai.012G081200.1 | 1e-42 | (Gossypium raimondii) | ||||
STRING | POPTR_0004s18120.1 | 2e-42 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4175 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 3e-23 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma20g01410.1 |