PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma208g00370.1
Common NameZOSMA_208G00370
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 567aa    MW: 62213.8 Da    PI: 4.8216
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma208g00370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.59.7e-1271445201374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                       lv+lL++c e v+ +d+ +a +++ +++ +  s++ +    + ++a yf  AL +rl+ s+ + ++ + +   s   ++e+   ++ f+e++P
  Zosma208g00370.1 144 LVHLLMTCGESVQRDDTPMAISVIDEMRSIlLSNNINttfGIGKVAGYFIDALTRRLFTSGGGSSS-CCCDFFS---TVESEILYQNFYEACP 232
                       68**************************997555544234679***************96666554.4455554...5666678899****** PP

              GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                       +lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lRiTg+g+p+s+ +++l+e+g rLa++A+++gv+f f+ ++
  Zosma208g00370.1 233 YLKFAHFTANQAILEAFDGHDCVHVIDFSLMHGLQWPALIQALALRPGGPPFLRITGIGPPSSDGRDSLREIGLRLADLARSIGVRFAFRGVA 325
                       ********************************************************************************************* PP

              GRAS 183 akrledleleeLrvkp....gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                       a+rl+d+++++L+v      +E++aVn+v+qlhrll ++v+ +   +++vL  + +l+Pk++++veqeadhn+++F++rf+e+l yys++fds
  Zosma208g00370.1 326 ANRLDDVKPWMLHVAAgpaaKEVVAVNSVMQLHRLLTDDVDNDAtSINSVLGWIHDLKPKIITLVEQEADHNNKNFMDRFTESLFYYSTMFDS 418
                       ***************99999******************999988789********************************************** PP

              GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                       l+a+    ++e++ + +++l+rei+nv++cega+r+erhe l kWr+r++ aGFk+ +l+++a+kqa++ll  +++dgy vee +g+l+lgW+
  Zosma208g00370.1 419 LDAG--GGNNEQRGLAEVYLQREICNVLCCEGASRTERHEPLTKWRARMSGAGFKTRHLGSNAYKQASMLLTLFSGDGYCVEEIDGCLMLGWH 509
                       *999..4566666667777************************************************************************** PP

              GRAS 364 drpLvsvSaWr 374
                       +rpL+s+SaWr
  Zosma208g00370.1 510 SRPLISASAWR 520
                       **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.4E-62891IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098560.307118500IPR005202Transcription factor GRAS
PfamPF035143.3E-124144520IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAAYRSEGTA ANIWFDPTAK SAEIEVRLAE AGYLGRVADL QQVYRPDERR TVFSPDPQII  60
QFSDSSTIIH GNNPSDLSGW VDSMLSQIST PAMPPLLSSA PSEDERQQIQ SNPFQFCQTS  120
TVQVPSVTYQ SQVPQMDLDS GIQLVHLLMT CGESVQRDDT PMAISVIDEM RSILLSNNIN  180
TTFGIGKVAG YFIDALTRRL FTSGGGSSSC CCDFFSTVES EILYQNFYEA CPYLKFAHFT  240
ANQAILEAFD GHDCVHVIDF SLMHGLQWPA LIQALALRPG GPPFLRITGI GPPSSDGRDS  300
LREIGLRLAD LARSIGVRFA FRGVAANRLD DVKPWMLHVA AGPAAKEVVA VNSVMQLHRL  360
LTDDVDNDAT SINSVLGWIH DLKPKIITLV EQEADHNNKN FMDRFTESLF YYSTMFDSLD  420
AGGGNNEQRG LAEVYLQREI CNVLCCEGAS RTERHEPLTK WRARMSGAGF KTRHLGSNAY  480
KQASMLLTLF SGDGYCVEEI DGCLMLGWHS RPLISASAWR IGDDVRNSNC STDDNSTLMM  540
NNNNNGGSST TNSSSSTSSN NNINSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6415151926378Protein SCARECROW
5b3h_A8e-6415151925377Protein SCARECROW
5b3h_D8e-6415151925377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021817759.10.0DELLA protein DWARF8-like isoform X1
RefseqXP_021817760.10.0DELLA protein DWARF8-like isoform X2
RefseqXP_021817761.10.0DELLA protein DWARF8-like isoform X3
TrEMBLA0A0K9PLB60.0A0A0K9PLB6_ZOSMR; Putative DELLA protein GAI
STRINGEMJ048300.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-135GRAS family protein