PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma207g00250.1
Common NameZOSMA_207G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 360aa    MW: 40955.3 Da    PI: 6.6394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma207g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.11e-0591114226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       k  lC ff + G C  G +CkF+H+
  Zosma207g00250.1  91 KSILCEFFKA-GMCAKGFKCKFSHD 114
                       6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-489115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-689114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.80289116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-491115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.737159197IPR000571Zinc finger, CCCH-type
SMARTSM0035618159196IPR000571Zinc finger, CCCH-type
PfamPF165431.3E-14216296IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MPPKDKQSKA DLAKKQKNVE DKTFGLKNKK KSKSVQKYVQ NIQASAQPKP DPSKLAAKKK  60
KDEDKAREKE LNDLFKVAVT QPKVPVGVDP KSILCEFFKA GMCAKGFKCK FSHDLNVQRK  120
GEKIDIYSDK RDAGTMEDWD QDTLEKVVAE KNMEYNHNKP TDIICKFFLD AVEKKQYGWF  180
WVCPNGSKGC HYRHALPPGY ILKSQMKALL AEESSKVSIE EEIENQRAKT THHTTMTTEI  240
FNEWKRKKIA EREAGMALLQ AERVKNDRMS GRELFMANAS LFVDDIDSYE KYQREDELNT  300
AASSKDKQSI VRDEGPSTSI LTDADAEELF GDDDDDELDI DELNELEATL SKTSIHIKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238516.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ21e-169C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A0K9PL460.0A0A0K9PL46_ZOSMR; Zinc finger CCCH domain-containing protein 11
STRINGERM957161e-179(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-128C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]