PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma1g03800.1 | ||||||||
Common Name | ZOSMA_1G03800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 29101 Da PI: 10.1813 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.2 | 1e-36 | 58 | 157 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+lap fpa+qp f n+h+lFG+sn++kllk+++ e++dam+s+++++++rar Pv G++ vi++lq++l+ +a+la Zosma1g03800.1 58 ACAACKHQRRRCQPDCILAPFFPADQPDIFINAHRLFGVSNITKLLKSIDVREHRDAMNSIIFHSDCRARYPVGGCLDVIKNLQNKLDVYNAQLA 152 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+e+ Zosma1g03800.1 153 FLNER 157 98875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.526 | 57 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-35 | 58 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MKMLPIVQTR MNGRSNGPIR RNYRGRSNHV VNQIHPYVDL SKRPPPLLVA TTPTSSHACA 60 ACKHQRRRCQ PDCILAPFFP ADQPDIFINA HRLFGVSNIT KLLKSIDVRE HRDAMNSIIF 120 HSDCRARYPV GGCLDVIKNL QNKLDVYNAQ LAFLNERIAF FQNLGSNSYF IQQQQQQQQQ 180 QQQTITMPNS NSSHHHHHHH RRHQQPTGEA DFLPLLSNVL QQTVKNNQKK EEEEMASNKK 240 IMVHEVDPRQ QS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-25 | 51 | 144 | 4 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-25 | 51 | 144 | 4 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PQ85 | 0.0 | A0A0K9PQ85_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-34 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma1g03800.1 |