PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g03200.1
Common NameZOSMA_1G03200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family BBR-BPC
Protein Properties Length: 300aa    MW: 33419.2 Da    PI: 10.2955
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g03200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind291.14.7e-8912991301
       GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqr...dkalaernkalverdnkllalllvensl 91 
                     mdddg     n+gyy++  s +++lglqlms ++  +++++ r+  ls+++a++ +rdm  +q+    + ++   +  +++++kl+++ + +++ 
  Zosma1g03200.1   1 MDDDGVLGiPNWGYYDQP-SKNNQLGLQLMSGMS-LEQQQQGRKPVLSGNSATFLHRDMTEQQSvhsSTSMEIIREGWLHHREKLIQMFPPNHQN 93 
                     9999999999******99.66779*********6.555666666668***********8876651114455555556666677888888877765 PP

       GAGA_bind  92 a...salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                         + +p+    ++  + +  ++q +e ++e+++ + r       + + +++ +  +kkkkk+++  k+pk++k+k  +++ +   ++++  ++
  Zosma1g03200.1  94 CytlQFDPALPMPSQSLQALRPTEQSKEIKIEEESGGRRTP-----QDV-TQTVVPLKKKKKKQGRPCKVPKVTKQKIIREELDGG-DSSSVTKV 181
                     53442233332233333333333333445555555553332.....233.33445556666777899999****999888866555.44444444 PP

       GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278
                      +++ + +k++++++ng++lD+s++P+PvC+CtGa+r CY+WG GGWqSaCCtt+iS++PLPvstkrrg+RiagrKmS+gafkk+LekLa+eGy+
  Zosma1g03200.1 182 GKSASSLRKNTEVTINGIDLDNSRIPTPVCTCTGAPRLCYRWGVGGWQSACCTTSISMHPLPVSTKRRGSRIAGRKMSHGAFKKVLEKLAGEGYN 276
                     578999***************************************************************************************** PP

       GAGA_bind 279 lsnpvDLkdhWAkHGtnkfvtir 301
                     lsn +DL++hWAkHGtnkfvtir
  Zosma1g03200.1 277 LSNQIDLRSHWAKHGTNKFVTIR 299
                     **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.6E-931299IPR010409GAGA-binding transcriptional activator
SMARTSM012261.0E-1141299IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDDDGVLGIP NWGYYDQPSK NNQLGLQLMS GMSLEQQQQG RKPVLSGNSA TFLHRDMTEQ  60
QSVHSSTSME IIREGWLHHR EKLIQMFPPN HQNCYTLQFD PALPMPSQSL QALRPTEQSK  120
EIKIEEESGG RRTPQDVTQT VVPLKKKKKK QGRPCKVPKV TKQKIIREEL DGGDSSSVTK  180
VGKSASSLRK NTEVTINGID LDNSRIPTPV CTCTGAPRLC YRWGVGGWQS ACCTTSISMH  240
PLPVSTKRRG SRIAGRKMSH GAFKKVLEKL AGEGYNLSNQ IDLRSHWAKH GTNKFVTIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798184.12e-91protein Barley B recombinant
RefseqXP_008798191.12e-91protein Barley B recombinant
TrEMBLA0A0K9PN010.0A0A0K9PN01_ZOSMR; GAGA-binding transcriptional activator
STRINGXP_008798184.17e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.39e-65basic pentacysteine 2