PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g02530.1
Common NameZOSMA_1G02530
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 334aa    MW: 37644.6 Da    PI: 5.2057
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g02530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.82.5e-171060250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyeys 50
                    +ie++++r+ tf kR+ gi KKA ELS+LC+++v +i  +s  ++ +++++
  Zosma1g02530.1 10 FIEDERRRKSTFGKRLDGIKKKAMELSTLCGIDVVLICTGSadNNSIQTWP 60
                    8*************************************9973356788886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.596146IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-13161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-18181IPR002100Transcription factor, MADS-box
CDDcd002661.09E-19384No hitNo description
PRINTSPR004041.1E-5323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-161058IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MVRKRLPYRF IEDERRRKST FGKRLDGIKK KAMELSTLCG IDVVLICTGS ADNNSIQTWP  60
ENLLEVQNII DRFGRLGIED RDRRKGDLKS HMKNQIKKIS AELNRLRRDN VANGYLMFNY  120
GILLPQGISN TSAVFASLEA KLAAVNERIG VLMDNMKLGN NVDSFCLDDS PITFSHYFED  180
QVGMTGLDEM FNNNCEVGGN GQSSQFVQDV MPLNYIMPQL QQVDHYNNGE GCSTTSTFVD  240
PYCVNYAAQD SEIGFSNSNI ARMISNSTTP ALPPPPYDNQ IISKYNLIGD DYINSDYLPL  300
MWLTMPETTT SSNQIIFHRP QDSPFYPGTP HQM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217RKRLPYRFIEDERRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PMT20.0A0A0K9PMT2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16694411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.11e-12M-type_MADS family protein