PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma1g01470.1

Common Name

ZOSMA_1G01470

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

WRKY

Protein Properties

Length: 513aa MW: 56939.7 Da PI: 6.9948

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma1g01470.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	202	261	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++prsYYrCt a +Cpv+k+v+r ed +++++tYeg+Hnh+ Zosma1g01470.1 202 MNDGCQWRKYGQKVAKGNPCPRSYYRCTAApECPVRKQVQRFVEDMSILTTTYEGKHNHP 261 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-31	187	261	IPR003657	WRKY domain
SuperFamily	SSF118290	1.06E-26	194	262	IPR003657	WRKY domain
PROSITE profile	PS50811	26.865	197	263	IPR003657	WRKY domain
SMART	SM00774	1.3E-35	202	262	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	203	261	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MITTNTEDLN VKHLEMMMMS KVSSSENTTV AAAATEADDI IISQKEILTS KAEISEIKQE 60 NERLKMKLSQ VIKDYRSLQT QFDHQDDPKL QMSLSLGDLG RCGSSHLHTE EEEEEEEVTK 120 HGEEKFEQEL GLQLGLNIGF ENKTKEKQEE QEEEEEKKEG WVTRKILKNM RSKRGDDDDE 180 FSYNPIKKAR VSVRTRYDGI MMNDGCQWRK YGQKVAKGNP CPRSYYRCTA APECPVRKQV 240 QRFVEDMSIL TTTYEGKHNH PLSEAASSMA KTTSMAMNML LSKSSQSKAG GTSLAPISTI 300 TSINGVNYSL TTNNIPHLST ISPSHPTITL DLTLSQSSSS SSSSSSSPLQ QNQWRRLGLM 360 SSNTTATGGL YQFESIPNKI LNLNYQGQAQ QQSFYKSHAG LSDTITVATK AIALDPSFQS 420 ALAATVASVL GARGGGAGEM GRRIEGLKME DRILSSLLPN YLPSSSTTLN TNLLLTQHQN 480 QHNHRRHHPA SIPFSNHMNN EHGRSPFSAN RE*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MITTNTEDLN VKHLEMMMMS KVSSSENTTV AAAATEADDI IISQKEILTS KAEISEIKQE  60
NERLKMKLSQ VIKDYRSLQT QFDHQDDPKL QMSLSLGDLG RCGSSHLHTE EEEEEEEVTK  120
HGEEKFEQEL GLQLGLNIGF ENKTKEKQEE QEEEEEKKEG WVTRKILKNM RSKRGDDDDE  180
FSYNPIKKAR VSVRTRYDGI MMNDGCQWRK YGQKVAKGNP CPRSYYRCTA APECPVRKQV  240
QRFVEDMSIL TTTYEGKHNH PLSEAASSMA KTTSMAMNML LSKSSQSKAG GTSLAPISTI  300
TSINGVNYSL TTNNIPHLST ISPSHPTITL DLTLSQSSSS SSSSSSSPLQ QNQWRRLGLM  360
SSNTTATGGL YQFESIPNKI LNLNYQGQAQ QQSFYKSHAG LSDTITVATK AIALDPSFQS  420
ALAATVASVL GARGGGAGEM GRRIEGLKME DRILSSLLPN YLPSSSTTLN TNLLLTQHQN  480
QHNHRRHHPA SIPFSNHMNN EHGRSPFSAN RE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	189	262	1	73	WRKY transcription factor 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PPM7	0.0	A0A0K9PPM7_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-47	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Zosma1g01470.1