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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zosma1g01340.1 |
| Common Name | ZOSMA_1G01340 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
| Family |
C3H |
| Protein Properties |
Length: 260aa MW: 29939.3 Da PI: 8.9014 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma1g01340.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 18.9 | 2.7e-06 | 85 | 103 | 8 | 25 |
GGGGTS.--TTTTT-SS-S CS
zf-CCCH 8 ffartG.tCkyGdrCkFaH 25
+++ +G C+yG++C F H
Zosma1g01340.1 85 NWYNSGkDCPYGSKCAFLH 103
5888888************ PP
|
| 2 | zf-CCCH | 24.3 | 5.5e-08 | 145 | 169 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k ++C ++ rtG C +G++C +aHg
Zosma1g01340.1 145 KKKICFNWTRTGSCTFGNNCLYAHG 169
778999******************8 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 3.3E-7 | 32 | 67 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 10.803 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.51 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.183 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.49 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-5 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-6 | 82 | 105 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-8 | 142 | 174 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.962 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-5 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.2E-6 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.2E-10 | 145 | 176 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MQPITRSTMT TPLIRQHPPA FQSNNSSNEN NRSLFYKTRF CDRFKAGCCP LRSEDCSYAH 60
EASDLHDPPD NWHDKANWRP QKFCNWYNSG KDCPYGSKCA FLHLGQEKQL LNGHSRFQEP 120
SNIISIETNK FSSEINGEQR PLPTKKKICF NWTRTGSCTF GNNCLYAHGH TDQRNPSSST 180
EAEGPRGGGG LRVSVSDLAN ACRKDNDEKE RPAYNSKRVR EREFEYNHRK KNKTELAVNM 240
EYINSKCIKW RSQIYADWI*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 217 | 230 | RVREREFEYNHRKK |
