PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g01040.1
Common NameZOSMA_1G01040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 683aa    MW: 73614.2 Da    PI: 5.4002
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g01040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.6e-30105189187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++e+laLi++r++m+ ++r++ lk+ lW++vs+k++++g++rs+k+Ckek+en++k+yk++keg+ +r  ++ +++++f qlea
  Zosma1g01040.1 105 RWPREETLALIKIRSDMDATFRDSTLKGMLWDDVSRKLADQGYKRSAKKCKEKFENVHKYYKRTKEGRAGR--QDGKNYRFFAQLEA 189
                     8********************************************************************97..66678******985 PP
2trihelix104.57.8e-33412497187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev++Li++r+ +e+r+r++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a
  Zosma1g01040.1 412 RWPKAEVHVLIKLRSGLESRYRDAGPKGPLWEEISAGMKDMGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 497
                     8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.036102164IPR001005SANT/Myb domain
PROSITE profilePS500906.841104162IPR017877Myb-like domain
PfamPF138371.4E-20104190No hitNo description
CDDcd122032.45E-27104169No hitNo description
PROSITE profilePS500906.899405469IPR017877Myb-like domain
SMARTSM007170.87409471IPR001005SANT/Myb domain
CDDcd122033.21E-30411476No hitNo description
PfamPF138371.3E-22411498No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MQQGGSQYGV PPPHTASSED MTTHMFTGEL PQQHMAEAVP PINTRAPTEE GVGVGVGVGV  60
GVGGGNYEEL TTTVLSGNFN EEDEAERGVG GSGGGGGSAA VLGNRWPREE TLALIKIRSD  120
MDATFRDSTL KGMLWDDVSR KLADQGYKRS AKKCKEKFEN VHKYYKRTKE GRAGRQDGKN  180
YRFFAQLEAL HNISGGGSSG SGAVRYQPAP LSSVAPITAT APLISLTALA TGGVGGGSGG  240
GFSMSTNSSS SESDGGEQNE RKRKRRSSSS SSGGGGGGGG VSKKTMSFFK VLMKQLMDQQ  300
ASMQQRFLET IEKREQDRMI REEAWKRQEM SRLTREHDAM AQERAMSASR DAAIINFLQK  360
YTGQKISIPV VGAGNVKLPQ QDPVEEAQVG GEVQMGGITN AGTGGDPAAS SRWPKAEVHV  420
LIKLRSGLES RYRDAGPKGP LWEEISAGMK DMGYNRNAKR CKEKWENINK YFKKVKESNK  480
KRPEDAKTCP YFHQLDALYR KKTSVSDAAI ANIAADDDDD NNQESNLIST VAQPQPLSQP  540
MDAVSNVPNI NGGINTAAII NTVPPNSNGE VRRNSDAGED SGVIKPEHML KGMIHAHAAM  600
DKFEKHGTET CNINDDDDDR GDDEEDNDND DDDEDEDDEQ QKMAYKIEYQ RTTVDNTSNG  660
GTNQSTNSAT GVAAGSFLAM VQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155KRSAKKCKE
2260265RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PMF10.0A0A0K9PMF1_ZOSMR; Trihelix transcription factor
STRINGGSMUA_Achr11P03520_0011e-159(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-75Trihelix family protein