PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma1g00270.1 | ||||||||
Common Name | ZOSMA_1G00270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21138.7 Da PI: 8.1295 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.7 | 3.6e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+Ca+dC++ap fp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvye++ar+rdPvyG+vg i+ lq+ ++ql+ +la Zosma1g00270.1 7 PCASCKLLRRRCATDCIFAPFFPSDDPHKFAVVHKVFGASNVSKMLQDLPIQQRPDAVSSLVYESNARMRDPVYGCVGAISYLQNLVSQLQMQLA 101 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Zosma1g00270.1 102 VAQTE 106 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.408 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-41 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MAGGNSPCAS CKLLRRRCAT DCIFAPFFPS DDPHKFAVVH KVFGASNVSK MLQDLPIQQR 60 PDAVSSLVYE SNARMRDPVY GCVGAISYLQ NLVSQLQMQL AVAQTEILCI QMQQDSSNSP 120 SPVLMHPSAS SSHADEKNNN NNKNNTKNNT ISSSSFILTN NLSGLPQFFN SSAAASAGGP 180 SGNVTQERPT RESLWA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-46 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-46 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008804108.1 | 1e-78 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 7e-68 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0K9PM51 | 1e-143 | A0A0K9PM51_ZOSMR; Protein LATERAL ORGAN BOUNDARIES | ||||
STRING | XP_008804108.1 | 4e-78 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-69 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma1g00270.1 |
Publications ? help Back to Top | |||
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