PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma19g01430.1
Common NameZOSMA_19G01430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 291aa    MW: 32618.3 Da    PI: 6.8735
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma19g01430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091194216123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C+ Cg  F +   L  H+r+H
  Zosma19g01430.1 194 YACSVCGNKFISGQALGGHMRRH 216
                      89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.83E-8109132No hitNo description
SMARTSM0035560110130IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64110141IPR007087Zinc finger, C2H2
PfamPF139122.9E-5110131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-8189216No hitNo description
Gene3DG3DSA:3.30.160.603.8E-5190216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.9E-10193217IPR007087Zinc finger, C2H2
SMARTSM003550.059194216IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097194216IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDNLQGNNGS NQEHHRQHKD DQSDSTMDPW RKNICPENSN QHYVSLSLFL TEDEKLSMEG  60
VVLLHKQPMK KILETRGDAQ NNMIFSRNET IGDDSIIENG KAKLENIHTY GCKTCNKRFL  120
TLQALNDHRH KQSKTMTGSI PYHQYAHNTF NPSRFIDKEG CNLDISLGSS FSIGSSSMPL  180
SSDCDIAVKK EKVYACSVCG NKFISGQALG GHMRRHRTVV QPIIRNSPRS TQPSCHFPFD  240
LNLPAPFEKS DLAEPTINSS QPPPPSTSTH TRSFNFSLDD FVEYGDDTVD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PNL10.0A0A0K9PNL1_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-20C2H2 family protein