PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma19g00650.1

Common Name

ZOSMA_19G00650

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

WRKY

Protein Properties

Length: 306aa MW: 33213.6 Da PI: 10.549

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma19g00650.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.3e-30	225	281	3	58
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp+++++tYe+eH+h Zosma19g00650.1 225 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERARDDPTMLIVTYENEHRH 281 9**********************9888*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.3E-15	178	221	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.4E-32	211	283	IPR003657	WRKY domain
PROSITE profile	PS50811	31.146	218	284	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-26	221	281	IPR003657	WRKY domain
SMART	SM00774	1.7E-35	223	283	IPR003657	WRKY domain
Pfam	PF03106	4.2E-26	225	281	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MKDRIAIQEA AAAGISSMEH LVTQISSQSQ IDCREITDFT VEKFKKVISL LDRSGHARFR 60 RGPAVTSSSS CSLPPNLTPK VTTSPTKPVS SILDIVKPDE TTKLNSRLSN SNNSFYISSA 120 PMSSANSSFR SSLTGDGSVS NGKYGSSSLL LTSTSAAAAA SLSSAGEKVA VPMKKTVRCH 180 NHVHSSEVSG NLGRCHCSKR SRKSRVKRTI RVPSISTKIS DIPPDEYSWR KYGQKPIKGS 240 PYPRGYYKCS TVRGCPARKH VERARDDPTM LIVTYENEHR HIDPTTHSPS VIKTARSDGR 300 LVFGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-20	221	284	15	77	Probable WRKY transcription factor 4
2lex_A	7e-20	221	284	15	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265415.1	1e-105	PREDICTED: probable WRKY transcription factor 17
Swissprot	Q9SV15	2e-93	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A0K9PN29	0.0	A0A0K9PN29_ZOSMR; WRKY transcription factor 7
STRING	XP_010265415.1	1e-104	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP617	38	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	1e-75	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	Zosma19g00650.1

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]