PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma19g00510.1
Common NameZOSMA_19G00510
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 347aa    MW: 38297.6 Da    PI: 7.4615
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma19g00510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.26.2e-15251281129
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGly 29 
                      C++Cg t   Tp++Rrgpdg++tLCnaCGl+
  Zosma19g00510.1 251 CHHCGITAksTPMMRRGPDGPRTLCNACGLM 281
                      *****99889*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.0E-10115150IPR010399Tify domain
PROSITE profilePS5132014.772115150IPR010399Tify domain
PfamPF062002.5E-12120149IPR010399Tify domain
PfamPF062031.3E-16176218IPR010402CCT domain
PROSITE profilePS5101713.612176218IPR010402CCT domain
SMARTSM004011.1E-5245311IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-9249289No hitNo description
CDDcd002028.24E-11250281No hitNo description
Gene3DG3DSA:3.30.50.106.9E-13250282IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.3E-12251281IPR000679Zinc finger, GATA-type
PROSITE patternPS003440251278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSENPTPPVD MEGLRGGGAG LYSSETQHHE HIQSVHPVMH LPSQIKDVHG ANNNSGLLVM  60
PHDGRLYGQE QEHGVIHGGA GVVEGLEEDH DGAVDSEGME GEVPQDASNL GIMVAPGMGN  120
QLTLSFQGEV YVFDSVSPEK VQAVLLLLGG REMNPGAATV PSSTQQNNRR SNYPQRVASL  180
MRFREKRKER NFDKKIRYSV RKEVAQRMQR NKGQFTSSKS KTEDSTMGIA NWDATQNWSA  240
EDNQPQAASV CHHCGITAKS TPMMRRGPDG PRTLCNACGL MELLGISRRL AWFIFKVPWV  300
CQILGMKTAM KHLLLINHLW STQTVMILHH RSICTFPLLT LMISIE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811434.11e-112GATA transcription factor 20-like
SwissprotQ5Z4U55e-82GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0K9PNC10.0A0A0K9PNC1_ZOSMR; GATA transcription factor 25
STRINGXP_008811434.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-77ZIM-LIKE 2