PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 329aa MW: 38079.3 Da PI: 9.6872

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma19g00310.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.6e-06	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Zosma19g00310.1 39 YVCEICDQGFQRDQNLQMHRRRH 61 9*********************9 PP
2	zf-C2H2	15.9	3.7e-05	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ Zosma19g00310.1 120 WVCGRCSKAYAVQSDYKAHLKTC 142 58*******************98 PP
3	zf-C2H2	11.4	0.00096	150	168	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Zosma19g00310.1 150 DCGRVFSRVESFIEHQDTC 168 9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.5E-5	38	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.13E-6	38	61	No hit	No description
SMART	SM00355	0.0051	39	61	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.866	39	61	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	41	61	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	84	114	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.9E-4	111	141	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.13E-6	115	140	No hit	No description
SMART	SM00355	140	120	147	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MAEINECSNK RRRRPAGTPD PDAEVVHLSA DTLMESERYV CEICDQGFQR DQNLQMHRRR 60 HKVPWKLVKR ERTDNNLDAK RRVFVCPEPT CLHHDPRHAL GDLVGIKKHF RRKHSNHKQW 120 VCGRCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDTCNR FGRHAPSTQI 180 FLPIRTTQPP APTPRHNVEL QLLPSSNSVP TTQSTIYEDG PEFTQLHLSI GHKDPTTGSR 240 LENSKEKMEL ALAIEARKKV ERNVKMAEEE FSNAKRLRKQ AQMELNKAVL MREHALNQIK 300 SMMLEITCHS CQKQQQRQQD QQHQQKFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-16	118	169	5	56	Zinc finger protein JACKDAW
5b3h_F	3e-16	118	169	5	56	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380059.1	1e-135	PREDICTED: protein indeterminate-domain 16-like
Swissprot	Q9C9X7	1e-120	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A0K9PN99	0.0	A0A0K9PN99_ZOSMR; Uncharacterized protein
STRING	Aquca_002_01252.1	1e-131	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-122	indeterminate(ID)-domain 14

Link Out ? help Back to Top
Phytozome	Zosma19g00310.1

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]