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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Zosma19g00300.1 |
Common Name | ZOSMA_19G00300 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family |
B3 |
Protein Properties |
Length: 454aa MW: 50925.5 Da PI: 7.3835 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zosma19g00300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 52.5 | 8.7e-17 | 337 | 434 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
+k+l +sdv+++gr+vlpkk ae + + ++e+++l+++d + + +W++k++y ++ks++y+++ ++ +Fv+ +gLk+gDf+ +l++ ++
Zosma19g00300.1 337 KKELRRSDVSSLGRIVLPKKQAEGYlpYLTQKEGIQLQMRDfTYSGVWTFKYRYwpNNKSRMYIME-NTGDFVRIHGLKTGDFFAVYLEH-CSG 428
588999*********************555568899*****8899*********766666666665.********************987.777 PP
..EEEE CS
B3 91 elvvkv 96
++ v+
Zosma19g00300.1 429 TFIVRG 434
677765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MEKGGEGEFH RFSHFLNTFP HLKGSFSTVP TTTSPDWPPP LPSPSPSRGV FLNDKTTITN 60 VDHSFRSLED VGGVHQTNGD GLTNTFLSNF QSQSGGAYDP SGSEQVRNPY TLQSFFSENV 120 RSSGTVPGRS VDMANGGRKQ SCINESDFFS LKEPNSPGFP IKTPENGNLL VGGSHQKIST 180 TSSSSLELFH GEESNEIHNI NRQLNTTWFQ TYDYDCNYNC NCNYNFNYNS SVVSEDTPMI 240 LPTRKKKFVP VQQNHVRSGW NFIPYGVNTT NLSQIVMDPV LHFWQQRVLE TSQIYQKNSP 300 SPSPSTSGGN QILSSTSVCI DTDDKELERR GLSIVLKKEL RRSDVSSLGR IVLPKKQAEG 360 YLPYLTQKEG IQLQMRDFTY SGVWTFKYRY WPNNKSRMYI MENTGDFVRI HGLKTGDFFA 420 VYLEHCSGTF IVRGMKHDGG AERSQSQGNE NVQ*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j9b_A | 2e-35 | 332 | 436 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-35 | 332 | 436 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
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