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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zosma199g00100.1 |
| Common Name | ZOSMA_199G00100 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family |
HD-ZIP |
| Protein Properties |
Length: 218aa MW: 24342.4 Da PI: 9.6676 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma199g00100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.6 | 1.9e-17 | 73 | 127 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
k+ ++tkeq + Lee F++n++++ +++e L kl+L rqV vWFqNrRa+ k+
Zosma199g00100.1 73 KKLRLTKEQSRLLEESFKQNQTLNLKQKETLGLKLKLRPRQVEVWFQNRRARTKQ 127
67789***********************************************996 PP
|
| 2 | HD-ZIP_I/II | 107 | 1.4e-34 | 73 | 160 | 2 | 90 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
kk+rl+keq++lLEesF+++++L+ ++K++l +L+l+prqv+vWFqnrRARtk+kq+ ++y++L++ y +l+een+rL+keve Lr +
Zosma199g00100.1 73 KKLRLTKEQSRLLEESFKQNQTLNLKQKETLGLKLKLRPRQVEVWFQNRRARTKQKQTGMEYDQLRQFYGSLTEENRRLQKEVEYLR-A 160
9************************************************************************************99.4 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MNDPSCLELT MAVPGLSTSS GSEGGGGGFN QFNNGMRDLD MNRPASASGF EEDYQTVVVE 60
NGHDISESSN RPKKLRLTKE QSRLLEESFK QNQTLNLKQK ETLGLKLKLR PRQVEVWFQN 120
RRARTKQKQT GMEYDQLRQF YGSLTEENRR LQKEVEYLRA LHTHYEIPPS SLTMCPRCEK 180
VTTTAAAAAT MGKQIQNKSA GATTNFVGSR RPSSATC*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 120 | 128 | RRARTKQKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
