PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma196g00200.1

Common Name

ZOSMA_196G00200

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 441aa MW: 50661.9 Da PI: 6.8246

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma196g00200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.5	1.3e-26	123	219	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+++v++Li+a++++++++++++ +kk++W+++sk+m+erg+++sp+qC++k+++lnkryk++ + +++ +++++++ +++ Zosma196g00200.1 123 KWTDSMVKLLITAVSYIGDDSSSECnrgrrkfsilQKKGKWKSISKVMAERGCHVSPQQCEDKFNDLNKRYKRLYDVLGRGtSCQVVENPALL 215 7************99999998877788999999******************************************66****** PP trihelix 83 dqle 86 d+++ Zosma196g00200.1 216 DRMD 219 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-22	121	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MVPGSLYTVV DLQGQMHTHQ QQNPHGNLQK QQQQQHLHQP SHHYEHPGQM VCSGIGDVYP 60 LSGSQLQEHN QQTLAPVIEY NKVDRMKVST SEEDEHGFNA EDGIDSHQEF NKIKKNSPWQ 120 RVKWTDSMVK LLITAVSYIG DDSSSECNRG RRKFSILQKK GKWKSISKVM AERGCHVSPQ 180 QCEDKFNDLN KRYKRLYDVL GRGTSCQVVE NPALLDRMDN LSEKSKEDVR KILSSKHLFY 240 EEMCSYHNGN RLNLPADPAL QKSLQVALGC KDDHDTRKTS HDDLDEDDRG ADSDDMENES 300 GNTHGLHDDI IGGPCLPPKR LKRASDIQYS NGNTFSSLEC NARPITHAVS IDKIVPFPEG 360 TEPDLQKQWL MSRKIQLEEQ SLNIQIQMLE LEKQRFKWQR FSRKKERELE KVRLENEGMK 420 LENDRLGLEL KQKEIELGLR *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MVPGSLYTVV DLQGQMHTHQ QQNPHGNLQK QQQQQHLHQP SHHYEHPGQM VCSGIGDVYP  60
LSGSQLQEHN QQTLAPVIEY NKVDRMKVST SEEDEHGFNA EDGIDSHQEF NKIKKNSPWQ  120
RVKWTDSMVK LLITAVSYIG DDSSSECNRG RRKFSILQKK GKWKSISKVM AERGCHVSPQ  180
QCEDKFNDLN KRYKRLYDVL GRGTSCQVVE NPALLDRMDN LSEKSKEDVR KILSSKHLFY  240
EEMCSYHNGN RLNLPADPAL QKSLQVALGC KDDHDTRKTS HDDLDEDDRG ADSDDMENES  300
GNTHGLHDDI IGGPCLPPKR LKRASDIQYS NGNTFSSLEC NARPITHAVS IDKIVPFPEG  360
TEPDLQKQWL MSRKIQLEEQ SLNIQIQMLE LEKQRFKWQR FSRKKERELE KVRLENEGMK  420
LENDRLGLEL KQKEIELGLR *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	392	404	KQRFKWQRFSRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241711.1	1e-165	PREDICTED: uncharacterized protein LOC104586241
Refseq	XP_019056198.1	1e-165	PREDICTED: uncharacterized protein LOC104586241
Refseq	XP_019056199.1	1e-165	PREDICTED: uncharacterized protein LOC104586241
TrEMBL	A0A0K9PNY0	0.0	A0A0K9PNY0_ZOSMR; Sequence-specific DNA binding transcription factor
STRING	XP_010241711.1	1e-164	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-120	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Zosma196g00200.1