PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma18g01190.1
Common NameZOSMA_18G01190
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 342aa    MW: 36720.1 Da    PI: 7.4627
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma18g01190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.6e-29122175155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gL +e+v+SHLQkYRl
  Zosma18g01190.1 122 KPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMGVEGLKRENVASHLQKYRL 175
                      79*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.58E-18119179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-29121180IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-22122175IPR006447Myb domain, plants
PfamPF002492.2E-6125174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MKQEEPKWLT RWDMQELPSL DELVPLTKAL IPPDLALAFD IPTHINSDSN YVPTAAEAAV  60
ASGGGGGSDS LQQRQTPPLQ PSQSQSQSHS QSLSQQQQQV EYDSSDVVGS GGGDEHERTL  120
KKPRLVWTPQ LHKRFVDAVG HLGIKNAVPK TIMQLMGVEG LKRENVASHL QKYRLYLKRM  180
QGGHSSGGLN SSISAADSAM DHLFASAPVP THFLNRVPQQ PQPASLPGSV PFTAPPGAGA  240
MQHQHHQQML AAATHHYQHQ RHVGQLGSDL GFQHHRMPGS GGGGIRMVTP PSSADGAGIR  300
MMHHHSPLVM PYAEDLDSGC NNGSAGHGSG RRVLSLFPTN E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-30122178157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PPX30.0A0A0K9PPX3_ZOSMR; Response regulator 10
STRINGLus100272911e-71(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40970.16e-46G2-like family protein