PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma18g01100.1
Common NameZOSMA_18G01100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Dof
Protein Properties Length: 416aa    MW: 45717.2 Da    PI: 6.2839
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma18g01100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.56.8e-39101161262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rnvPvG+grr+nk+s+
  Zosma18g01100.1 101 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCRSCQRYWTAGGTMRNVPVGAGRRRNKHST 161
                      7899******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3192158IPR003851Zinc finger, Dof-type
PfamPF027014.9E-32103159IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.835105159IPR003851Zinc finger, Dof-type
PROSITE patternPS013610107143IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MADPSIKLFG RTIADYSDSP AFLIGDACGC DVKGISGTDL VNKESKEFVH CGEDAATSGV  60
DIGQSDNHRV QIHHHSLDGM AVSNNQVESG VSEKEKTLKK PDKILPCPRC NSMDTKFCYY  120
NNYNVNQPRH FCRSCQRYWT AGGTMRNVPV GAGRRRNKHS TQQLPICSNS ILTSPVDASV  180
TVHDHVCESM VVEALVGDQE SVGEVNPMMR CEENGGGEPS FPSEQVPENL DSVDKNGNTM  240
ADFMSPLQCY PPPPWSYPWN PLWNNNAPVV TNPGFCPTPI PFPFFWGCTA NWPPPNGVWT  300
MPSWVGVGSS GLGNNCSQLG KHSRDDDEKE EEEKTEKKSL WIPKTIRIDD PDEAAKSSIW  360
ATLGIKPYRN KLGRKPSIFK PLHPNKSRQT EATTQAGFLA NPAALSRSQT FQEGT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922885.17e-95cyclic dof factor 1
TrEMBLA0A0K9PS150.0A0A0K9PS15_ZOSMR; Cyclic dof factor 1
STRINGXP_008793337.14e-94(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-57cycling DOF factor 2