PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma18g00700.1
Common NameZOSMA_18G00700
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 317aa    MW: 34323.3 Da    PI: 6.6768
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma18g00700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.5e-16115160555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Zosma18g00700.1 115 HNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 160
                      9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.1E-20107170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-20107170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-18115164No hitNo description
PfamPF000108.8E-14115160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-18116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDENISRTSS NQNQNQISSF VLDHLFSSST CAASSSTTSP HFTGGSALYL PPISVPVMSH  60
EFDPSSLALH HGSRGKIPEA VDHDSESEEG VDEPANQSGG SRSSGSKRSR AADVHNLSEK  120
RRRSRINEKM KALQSLIPNS NKTDKASMLD EAIEYLKQLQ IQVQMLSMRN GMSLSPAFLP  180
GDHSAIQPSE MRMGYDVVNL SMAGGVLPPI TQDSLTQHQQ HPIHLPNQCP PSVCSIVPPK  240
DAPILTYNSE PSLIHQPQSN PQHPPFNLSA AAGDVYMKGI GLQPGLGSSH AARQATISNP  300
ESNHDQRQTM MREYTM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017180265.13e-52transcription factor SPATULA-like isoform X4
TrEMBLA0A0K9PRV30.0A0A0K9PRV3_ZOSMR; Uncharacterized protein
STRINGXP_008340258.11e-50(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-37bHLH family protein