PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Zosma18g00300.1

Common Name

ZOSMA_18G00300

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 185aa MW: 20597.7 Da PI: 7.4974

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma18g00300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F ++ L H++ H Zosma18g00300.1 23 YSCQYCDRRFHSSQALGGHQNGH 45 99**************9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.2E-5	19	49	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.53E-7	19	49	No hit	No description
Pfam	PF13912	2.6E-6	22	42	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.97	23	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MADEEMNRSI LCRNMNQAGK KVYSCQYCDR RFHSSQALGG HQNGHKQERL DNRRAQKDLE 60 GQLPEQAFYN YPYYSSSSYR YQPYQPSYRF NFVRPSNFFS GPSSLLAAHT PFASALRSDR 120 QLPLPLPLPS WMANNRNMEG NVNVNANLNG IAAENVAANG AGNGVGNGED EQVDDGGLDL 180 TLRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PPD8	1e-134	A0A0K9PPD8_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	3e-12	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Zosma18g00300.1