PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma189g00520.1
Common NameZOSMA_189G00520
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 387aa    MW: 43732.4 Da    PI: 4.7487
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma189g00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.44.7e-33311212101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k y++++d+e + ++sw+e+g sfvv d+  f+k++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         w F+++ F kg+k+ll
  Zosma189g00520.1  31 FLNKCYDMINDPESDAVVSWEEDGFSFVVRDSLAFSKDMLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WAFANDGFVKGQKHLL 114
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+rkk
  Zosma189g00520.1 115 RTINRKK 121
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.8E-5227120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.21E-3127120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-193154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2931120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSKRNGVGNE VAIVSSSSHP ASKPVPGVTP FLNKCYDMIN DPESDAVVSW EEDGFSFVVR  60
DSLAFSKDML PKYFKHNNFS SFVRQLNTYG FRKVDPDRWA FANDGFVKGQ KHLLRTINRK  120
KYMQVPIKPG QEKGANSISS ACVEVGKFGV EMEIEQLKRD KNILLQELVK LRQHQQSTDK  180
ELVIVKGRLQ SVEDGVKDRL QVMEQRQQKM FSFLTMALQR PEIISNAVQQ NGNSRTLTEA  240
NKKRRLPALE HPVNDPSNGQ IVEYNPFVCD NWNTLANPEH NSFSLVDGMK CLDIDAFMPE  300
SPNLPPTETE VGLNAPTMDE LLTELEVVDD DGRSNLDFSE MMDFDIGQFE SIQSFLDELP  360
VTEKKKSAID INLSEFQDQM QDNDGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23812011129Heat shock factor protein 1
5d5v_B3e-23812011129Heat shock factor protein 1
5d5v_D3e-23812011129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029119217.17e-95heat stress transcription factor A-1 isoform X1
RefseqXP_029119218.17e-95heat stress transcription factor A-1 isoform X1
RefseqXP_029119219.17e-95heat stress transcription factor A-1 isoform X1
RefseqXP_029119221.17e-95heat stress transcription factor A-1 isoform X1
RefseqXP_029119222.17e-95heat stress transcription factor A-1 isoform X1
RefseqXP_029119223.18e-95heat stress transcription factor A-1 isoform X2
RefseqXP_029119224.18e-95heat stress transcription factor A-1 isoform X2
SwissprotQ84T619e-82HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0K9PQ460.0A0A0K9PQ46_ZOSMR; Heat shock transcription factor
STRINGXP_008812463.17e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.15e-83heat shock factor 1
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]