PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma189g00360.1 | ||||||||
Common Name | ZOSMA_189G00360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 26478.8 Da PI: 5.1958 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.5e-09 | 71 | 119 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE+ RRdr+N++f eL +l + + +K +Ka iL A + + +L Zosma189g00360.1 71 KSKACREKMRRDRLNDKFGELSAVLDPG---KPPKSDKAVILVDAARALAQL 119 67889********************998...89***********99988877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-11 | 62 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.573 | 68 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-6 | 69 | 124 | No hit | No description |
Pfam | PF00010 | 1.5E-6 | 72 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-5 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-10 | 76 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MGSNSIDYGW IDDVGGGSDG EYCWAIDGLS DLPPPSCLKI DHAYGGDADI CCPQQTDLGK 60 RSRNEVCARP KSKACREKMR RDRLNDKFGE LSAVLDPGKP PKSDKAVILV DAARALAQLR 120 SEAEELKDAN EKLQDTIKDL KEEKNELRDD KLKLKADKDR LEQQMKIMSM PSPGFIAHPA 180 AAYHAAAAAF ASQNQVPANK NTPYLPYTAA PSTWQWLLPG QWLPPAACDI REDQNNVSPT 240 A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940314.1 | 6e-80 | transcription factor ILR3 isoform X1 | ||||
TrEMBL | A0A0K9PS64 | 1e-177 | A0A0K9PS64_ZOSMR; Transcription factor ILR3 | ||||
STRING | XP_008803703.1 | 9e-78 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8173 | 36 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-44 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma189g00360.1 |