PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma185g00330.1
Common NameZOSMA_185G00330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 498aa    MW: 55571.3 Da    PI: 5.3327
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma185g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.82.3e-1281264971374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+++L++cA+a++++d+  ++ lL++l++++s +gdp++Rl ay+ e+L a+la+s+s++ykal+++e     s++ l++++++++v+P++kf
  Zosma185g00330.1 126 LKQTLIACAKAIANDDMMITEMLLKQLEKMVSVSGDPLKRLGAYVYEGLLAKLASSGSSIYKALRCKEPI---STDLLSYMHILFDVCPYFKF 215
                       5799*****************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       +++ aN aI ea+ ge+ vHiiDf+i +G QW++L++aLa++p+gpp+lRiTg+++p s+  +   l+ +ge+La++Ae+++vpfef++ v  
  Zosma185g00330.1 216 GYMSANGAIAEALRGENSVHIIDFQIAMGSQWVTLIRALAQQPGGPPHLRITGIDDPVSKyaRGGDLNLVGEKLASLAESCNVPFEFHP-VPV 307
                       *********************************************************99999999************************.577 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklp 276
                          ++++e+L++++gEala+n+++qlh+++desv++ ++rd+++++ kslsP+vv++veqe+++n++sF  rfle++++y+a+f+++ +++l 
  Zosma185g00330.1 308 FGWEVKIEHLEIRHGEALAINFAFQLHHMPDESVNTWNHRDRIIRMAKSLSPRVVTLVEQESNTNTASFYSRFLETIDFYTAMFETIdATQLT 400
                       777899*********************************************************************************9999** PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                       r++ eri  E+++++r+ivn++aceg er+erhe l kW+ r+++aGFk vpls ++++++klll++++++ +r+ e++g+l+lgWk+r++vs
  Zosma185g00330.1 401 RDNVERIHAEQHCVARDIVNIIACEGVERVERHELLTKWKTRFTMAGFKMVPLSPFVNSKIKLLLENYNEN-FRLVEDDGALYLGWKNRKMVS 492
                       *********************************************************************55.********************* PP

              GRAS 370 vSaWr 374
                        +aWr
  Zosma185g00330.1 493 SCAWR 497
                       ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.934100478IPR005202Transcription factor GRAS
PfamPF035148.0E-126126497IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MNQVQFHATQ PFQSLNDASS NDDSQLGIIP EQYSTPDSLG ASGYLINSSP STIGFTSTDG  60
SPLSQEIMLE NYGSPAGGFC VSEDTSHLKN KIRELEIAML GPEEFTGTNS LYSELNVPKV  120
IDYGDLKQTL IACAKAIAND DMMITEMLLK QLEKMVSVSG DPLKRLGAYV YEGLLAKLAS  180
SGSSIYKALR CKEPISTDLL SYMHILFDVC PYFKFGYMSA NGAIAEALRG ENSVHIIDFQ  240
IAMGSQWVTL IRALAQQPGG PPHLRITGID DPVSKYARGG DLNLVGEKLA SLAESCNVPF  300
EFHPVPVFGW EVKIEHLEIR HGEALAINFA FQLHHMPDES VNTWNHRDRI IRMAKSLSPR  360
VVTLVEQESN TNTASFYSRF LETIDFYTAM FETIDATQLT RDNVERIHAE QHCVARDIVN  420
IIACEGVERV ERHELLTKWK TRFTMAGFKM VPLSPFVNSK IKLLLENYNE NFRLVEDDGA  480
LYLGWKNRKM VSSCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-611284976375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116878.10.0scarecrow-like protein 21
RefseqXP_029116879.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0K9PQJ00.0A0A0K9PQJ0_ZOSMR; GRAS family transcription factor
STRINGXP_008800637.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]